RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA283169" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA283169 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
371803 371803 PRJNA283169_P_NODE_6381_length_169_cov_1.733333_g6318_i0 PRJNA283169 6381 169 1.733333 2.92933277 Desulfuromonas sp. DDH964 1823759 Bacteria Bacteria 141 2.93e-29   NTclustered gi|1015516084|gb|CP015080.1| 1823759 g6318 i0 89.474 2.69822485207101 114 9 66 2 14 124 2846962 2847075 Desulfuromonas sp. DDH964 chromosome, complete genome blastn 456 141 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp. DDH964
4198868 4198868 PRJNA283169_P_NODE_2224_length_275_cov_1.079646_g2162_i0 PRJNA283169 2224 275 1.079646 2.9690265 uncultured Desulfosarcina sp. 218289 Bacteria Bacteria 189 1.8499999999999993e-43   NTclustered gi|2621713517|emb|OY771548.1| 218289 g2162 i0 84.974 311.832727272727 193 21 69 7 6 195 92241 92428 MAG: uncultured Desulfosarcina sp. isolate c75788b4-9dc9-432e-af07-dc879bdb42fc genome assembly, chromosome: 1 blastn 85754 189 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae Desulfosarcina uncultured Desulfosarcina sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;