RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA283169" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA283169 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14400744 14400744 PRJNA283169_P_NODE_2512_length_260_cov_2.862559_g2450_i0 PRJNA283169 2512 260 2.862559 7.4426534 Lembadion sp. FG-2015 1607877 SAR_Eukaryotes SAR_Eukaryotes 348 2.7e-91   NTclustered gi|759083556|gb|KM222173.1| 1607877 g2450 i0 98.969 73.0153846153846 194 2 75 0 45 238 370 177 Lembadion sp. FG-2015 voucher FYB2013031305 large subunit ribosomal RNA gene, partial sequence blastn 18984 348 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Lembadionidae Lembadion Lembadion sp. FG-2015
15086600 15086600 PRJNA283169_P_NODE_3812_length_214_cov_0.878788_g3749_i0 PRJNA283169 3812 214 0.878788 1.88060632 Lembadion 54107 SAR_Eukaryotes SAR_Eukaryotes 313 7.83e-81   NTclustered gi|7839503|gb|AF255358.1| 54108 g3749 i0 98.857 83.3271028037383 175 2 100 0 1 175 373 199 Lembadion bullinum small subunit ribosomal RNA gene, partial sequence blastn 17832 313 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Lembadionidae Lembadion Lembadion bullinum
18223505 18223505 PRJNA283169_S_NODE_2295_length_188_cov_1.050360_g2281_i0 PRJNA283169 2295 188 1.05036 1.9746768 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 276 8.780000000000001e-70   NTclustered gi|300676719|gb|GQ377693.1| 151077 g2281 i0 93.085 2.91489361702128 188 13 100 0 1 188 67 254 Chilodonella uncinata gcr5-like mRNA, partial sequence blastn 548 276 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;