RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA283169" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA283169 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
371794 371794 PRJNA283169_P_NODE_5501_length_182_cov_1.533835_g5438_i0 PRJNA283169 5501 182 1.533835 2.7915797 Arcobacteraceae bacterium 2808971 Bacteria Bacteria 147 6.899999999999999e-31   NTclustered gi|2621713474|emb|OY771505.1| 2808971 g5438 i0 84.211 78.6153846153846 152 23 84 1 31 182 79102 79252 MAG: Arcobacteraceae bacterium isolate 2add6294-6f5d-422d-8d5e-cb49cf879a66 genome assembly, chromosome: 1 blastn 14308 147 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae   Arcobacteraceae bacterium
2922468 2922468 PRJNA283169_P_NODE_8163_length_162_cov_0.893805_g8100_i0 PRJNA283169 8163 162 0.893805 1.4479641 Helicobacter sp. MIT 99-5507 152489 Bacteria Bacteria 110 7.89e-20   NTclustered gi|50957179|gb|AY596264.1| 152489 g8100 i0 91.25 0.493827160493827 80 7 49 0 56 135 207 128 Helicobacter sp. MIT 99-5507 23S ribosomal RNA gene, partial sequence blastn 80 110 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. MIT 99-5507

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;