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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA283169" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA283169 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
371760 371760 PRJNA283169_P_NODE_301_length_747_cov_1.699140_g246_i0 PRJNA283169 301 747 1.69914 12.6925758 Acidobacteriota bacterium 1978231 Bacteria Bacteria 1099 0   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g246 i0 93.64 119.020080321285 739 42 99 5 11 747 3298654 3299389 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 88908 1099 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
5475157 5475157 PRJNA283169_P_NODE_3205_length_232_cov_1.010929_g3142_i0 PRJNA283169 3205 232 1.010929 2.34535528 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 383 6.48e-102   NTclustered gi|31789363|gb|AY281352.1| 171953 g3142 i0 96.552 369.961206896552 232 7 100 1 1 232 2960 2730 Uncultured Acidobacteria bacterium clone 23k22 genomic sequence blastn 85831 383 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
15674457 15674457 PRJNA283169_P_NODE_1353_length_343_cov_1.527211_g1291_i0 PRJNA283169 1353 343 1.527211 5.23833373 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 508 1.6e-139   NTclustered gi|2874253710|emb|OY969475.1| 2283092 g1291 i0 93.548 112.131195335277 341 22 99 0 1 341 1822056 1821716 MAG: Pyrinomonadaceae bacterium isolate MFD01916.bin.c.1 genome assembly, chromosome: 1 blastn 38461 508 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
20773290 20773290 PRJNA283169_P_NODE_6337_length_170_cov_1.280992_g6274_i0 PRJNA283169 6337 170 1.280992 2.1776864 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 191 2.89e-44   NTclustered gi|2874254027|emb|OY970352.1| 171953 g6274 i0 87.059 160.147058823529 170 20 99 2 3 170 2367023 2366854 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 27225 191 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
23323829 23323829 PRJNA283169_P_NODE_5199_length_187_cov_1.855072_g5136_i0 PRJNA283169 5199 187 1.855072 3.46898464 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 196 6.989999999999999e-46   NTclustered gi|2874254027|emb|OY970352.1| 171953 g5136 i0 88.75 2.59358288770053 160 18 86 0 19 178 2366921 2367080 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 485 196 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;