RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA280983" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA280983 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6749348 6749348 PRJNA280983_P_NODE_4926_length_289_cov_1.233333_g4811_i0 PRJNA280983 4926 289 1.233333 3.56433237 Halteromyces radiatus 101107 Fungi Fungi 185 2.5299999999999993e-42   NTclustered gi|2323701664|ref|XM_051541148.1| 101107 g4811 i0 78.397 3.26989619377163 287 61 99 1 3 289 683 398 Halteromyces radiatus GTP-binding nuclear protein GSP1/Ran (BX664DRAFT_271482), mRNA blastn 945 185 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Cunninghamellaceae Halteromyces Halteromyces radiatus
17636600 17636600 PRJNA280983_P_NODE_2114_length_497_cov_2.379464_g2001_i0 PRJNA280983 2114 497 2.379464 11.82593608 Mucoromycetes 2212703 Fungi Fungi 379 1.96e-100   NTclustered gi|1069939914|ref|XM_018438084.1| 763407 g2001 i0 82.599 89.0422535211268 431 73 87 2 34 463 1321 892 Phycomyces blakesleeanus NRRL 1555(-) ATP synthase F1 subcomplex beta subunit ATP2 (ATP2), partial mRNA blastn 44254 379 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Phycomycetaceae Phycomyces Phycomyces blakesleeanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;