RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA280983" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA280983 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5475034 5475034 PRJNA280983_P_NODE_2745_length_422_cov_2.335121_g2630_i0 PRJNA280983 2745 422 2.335121 9.85421062 Dictyostelium discoideum 44689 Evosea other_Eukaryota 418 3.479999999999999e-112   NTclustered gi|66826666|ref|XM_641596.1| 352472 g2630 i0 85.432 93.7559241706161 405 55 95 4 1 403 197 599 Dictyostelium discoideum AX4 hypothetical protein (act8) mRNA, complete cds blastn 39565 418 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
7436891 7436891 PRJNA280983_P_NODE_2006_length_514_cov_1.251613_g1893_i0 PRJNA280983 2006 514 1.251613 6.43329082 Dictyostelium 5782 Evosea other_Eukaryota 159 2.8799999999999993e-34   NTclustered gi|19110835|gb|AF465313.1| 44689 g1893 i0 78.125 7.41439688715953 256 52 49 3 13 266 3030 2777 Dictyostelium discoideum ABC transporter ABCA.11 (abca11) gene, partial cds blastn 3811 159 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;