RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA280983" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA280983 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
371675 371675 PRJNA280983_P_NODE_8641_length_186_cov_1.839416_g8526_i0 PRJNA280983 8641 186 1.839416 3.42131376 planctomycete str. 449 79870 Bacteria Bacteria 302 1.43e-77   NTclustered gi|12583969|gb|AF245373.1|AF245373 79870 g8526 i0 98.817 96.010752688172 169 2 91 0 1 169 2259 2427 Planctomycete str. 449 23S ribosomal RNA gene, partial sequence blastn 17858 302 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   planctomycete str. 449
5475042 5475042 PRJNA280983_P_NODE_405_length_1123_cov_6.821229_g342_i0 PRJNA280983 405 1123 6.821229 76.60240167 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 898 0   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g342 i0 81.69 562.195903829029 1136 157 98 37 6 1103 7050683 7051805 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 631346 898 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
8024952 8024952 PRJNA280983_P_NODE_6147_length_245_cov_1.801020_g6032_i0 PRJNA280983 6147 245 1.80102 4.412499 Pirellula sp. SH-Sr6A 1632865 Bacteria Bacteria 433 6.76e-117   NTclustered gi|1015448679|gb|CP011272.1| 1632865 g6032 i0 98.765 189.542857142857 243 3 99 0 3 245 3095921 3096163 Pirellula sp. SH-Sr6A, complete genome blastn 46438 433 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula Pirellula sp. SH-Sr6A
24010890 24010890 PRJNA280983_P_NODE_599_length_958_cov_4.562156_g523_i0 PRJNA280983 599 958 4.562156 43.70545448 Bacteria 2 Bacteria Bacteria 763 0   NTclustered gi|1850852299|gb|CP053450.1| 2026780 g523 i0 81.732 283.832985386221 947 143 97 23 26 958 720675 719745 MAG: Planctomycetota bacterium isolate PNC22 chromosome blastn 271912 763 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;