RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA280983" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA280983 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16949034 16949034 PRJNA280983_P_NODE_6054_length_248_cov_1.195980_g5939_i0 PRJNA280983 6054 248 1.19598 2.9660304 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 163 9.93e-36   NTclustered gi|551613833|ref|XM_005787831.1| 280463 g5939 i0 82.199 0.770161290322581 191 32 77 2 3 192 1427 1238 Emiliania huxleyi CCMP1516 putative EF-1 alpha/Tu like protein (EFG1), mRNA blastn 191 163 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
16949041 16949041 PRJNA280983_P_NODE_7374_length_212_cov_1.245399_g7259_i0 PRJNA280983 7374 212 1.245399 2.64024588 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 69.4 1.85e-7   NTclustered gi|551560520|ref|XM_005767102.1| 280463 g7259 i0 84.722 0.339622641509434 72 7 33 4 143 212 113 182 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 72 69.4 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;