RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA280983" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA280983 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1646463 1646463 PRJNA280983_P_NODE_802_length_838_cov_7.107731_g711_i0 PRJNA280983 802 838 7.107731 59.56278578 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 207 1.6999999999999998e-48   NTclustered gi|560190589|gb|KF633467.1| 91374 g711 i0 79.365 22.6241050119332 315 49 37 13 245 555 1604 1302 Diplonema papillatum strain ATCC 50162 28S ribosomal RNA gene, complete sequence blastn 18959 207 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
4198751 4198751 PRJNA280983_P_NODE_1524_length_598_cov_1.684882_g1415_i0 PRJNA280983 1524 598 1.684882 10.07559436 Petalomonas cantuscygni 56452 Euglenozoa other_Eukaryota 534 4.8199999999999997e-147   NTclustered gi|227908931|gb|FJ807263.2| 56452 g1415 i0 83 50.7859531772575 600 92 99 10 4 598 647 53 Petalomonas cantuscygni strain AMOP1 elongation factor-like gene, partial cds blastn 30370 534 1 Eukaryota Discoba   Euglenozoa Euglenida Petalomonadida Scytomonadidae Petalomonas Petalomonas cantuscygni
5475053 5475053 PRJNA280983_P_NODE_7025_length_221_cov_1.482558_g6910_i0 PRJNA280983 7025 221 1.482558 3.27645318 Bodonidae sp. RS407A2 429465 Euglenozoa other_Eukaryota 220 5.07e-53   NTclustered gi|134142284|gb|EF432480.1| 429465 g6910 i0 84.862 82.7058823529412 218 33 99 0 3 220 305 88 Bodonidae sp. RS407A2 clone A1 beta tubulin (btub) mRNA, partial cds blastn 18278 220 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae   Bodonidae sp. RS407A2
16949032 16949032 PRJNA280983_P_NODE_5894_length_253_cov_1.000000_g5779_i0 PRJNA280983 5894 253 1 2.53 Trypanosoma grayi 71804 Euglenozoa other_Eukaryota 231 2.75e-56   NTclustered gi|91983198|gb|DQ450539.1| 71804 g5779 i0 85.333 89.3280632411067 225 31 89 2 7 230 1016 793 Trypanosoma grayi beta tubulin gene, partial cds; alpha tubulin gene, complete cds; and beta tubulin gene, partial cds blastn 22600 231 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma grayi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;