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contig_metadata

24 rows where analysis = "blastn", bioproject = "PRJNA278119" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 24 ✖

tax_clade 1

bioproject 1

  • PRJNA278119 · 24 ✖

analysis 1

  • blastn · 24 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
371067 371067 PRJNA278119_P_NODE_1561_length_980_cov_2.139635_g1376_i0 PRJNA278119 1561 980 2.139635 20.968423 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 658 0   NTclustered gi|675185100|ref|XM_008903187.1| 761204 g1376 i0 80.225 63.1510204081633 890 164 90 10 100 980 1771 885 Phytophthora parasitica INRA-310 luminal-binding protein mRNA blastn 61888 658 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
371404 371404 PRJNA278119_P_NODE_4041_length_600_cov_7.566243_g3801_i0 PRJNA278119 4041 600 7.566243 45.397458 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 302 5.34e-77   NTclustered gi|698822976|ref|XM_009846215.1| 112090 g3801 i0 78.452 59.15 478 91 79 9 32 504 57 527 Aphanomyces astaci 40S ribosomal protein S13 mRNA blastn 35490 302 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
371538 371538 PRJNA278119_P_NODE_6181_length_479_cov_2.772093_g5935_i0 PRJNA278119 6181 479 2.772093 13.27832547 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 248 5.54e-61   NTclustered gi|166044724|emb|CU350983.1| 100861 g5935 i0 80.428 40.9895615866388 327 62 68 2 151 476 146 471 Aphanomyces euteiches cDNA blastn 19634 248 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
6749042 6749042 PRJNA278119_P_NODE_33766_length_171_cov_1.278689_g33517_i0 PRJNA278119 33766 171 1.278689 2.18655819 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 150 4.939999999999999e-32   NTclustered gi|301091304|ref|XM_002895794.1| 403677 g33517 i0 84.177 1.59649122807018 158 21 91 4 16 171 356 201 Phytophthora infestans T30-4 ADP-ribosylation factor family (PITG_20206), mRNA blastn 273 150 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
7436771 7436771 PRJNA278119_P_NODE_34806_length_169_cov_1.175000_g34557_i0 PRJNA278119 34806 169 1.175 1.98575 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 134 4.9000000000000005e-27   NTclustered gi|1236228842|gb|MF036250.1| 78236 g34557 i0 85.385 76.0059171597633 130 17 76 2 4 132 389 261 Phytophthora quercina isolate PL9 heat shock protein 90 (HSP90) gene, partial cds blastn 12845 134 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora quercina
8024362 8024362 PRJNA278119_P_NODE_13267_length_308_cov_1.362934_g13019_i0 PRJNA278119 13267 308 1.362934 4.19783672 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 267 9.43e-67   NTclustered gi|2795031183|ref|XM_067929373.1| 4785 g13019 i0 82.41 15.7727272727273 307 52 99 2 3 308 1041 736 Phytophthora cinnamomi V-type ATPase, A subunit (IUM83_05246), partial mRNA blastn 4858 267 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
8024372 8024372 PRJNA278119_P_NODE_13687_length_301_cov_1.178571_g13438_i0 PRJNA278119 13687 301 1.178571 3.54749871 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 178 4.43e-40   NTclustered gi|813171835|ref|XM_012349283.1| 695850 g13438 i0 77.778 2.86378737541528 306 57 100 11 1 301 725 1024 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 862 178 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
8024498 8024498 PRJNA278119_P_NODE_2227_length_822_cov_11.727038_g2016_i0 PRJNA278119 2227 822 11.727038 96.39625236 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 1338 0   NTclustered gi|325194231|emb|FR825088.1| 890382 g2016 i0 96.543 1.45863746958637 810 25 99 2 2 811 1380 574 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 1199 1338 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
8024836 8024836 PRJNA278119_P_NODE_5227_length_522_cov_1.818182_g4983_i0 PRJNA278119 5227 522 1.818182 9.49091004 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 230 2.2e-55   NTclustered gi|669165625|ref|XM_008620153.1| 1156394 g4983 i0 79.179 4.09195402298851 341 63 65 7 162 498 1379 1043 Saprolegnia diclina VS20 succinyl-CoA synthetase beta subunit mRNA blastn 2136 230 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
11849909 11849909 PRJNA278119_P_NODE_30190_length_180_cov_1.587786_g29941_i0 PRJNA278119 30190 180 1.587786 2.8580148 Achlya klebsiana 4767 SAR_Eukaryotes SAR_Eukaryotes 195 2.4e-45   NTclustered gi|166303|gb|J05116.1|ACKCAL 4767 g29941 i0 86.188 91.9666666666667 181 23 100 2 1 180 615 794 A.klebsiana calmodulin gene, complete cds blastn 16554 195 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
13125392 13125392 PRJNA278119_P_NODE_6331_length_474_cov_3.357647_g6085_i0 PRJNA278119 6331 474 3.357647 15.91524678 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 255 3.27e-63   NTclustered gi|695428657|ref|XM_009531708.1| 67593 g6085 i0 80.712 12.0021097046414 337 57 70 7 1 333 378 46 Phytophthora sojae hypothetical protein partial mRNA blastn 5689 255 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
14400551 14400551 PRJNA278119_P_NODE_6752_length_458_cov_2.310513_g6506_i0 PRJNA278119 6752 458 2.310513 10.58214954 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 228 6.879999999999999e-55   NTclustered gi|673036179|ref|XM_008873829.1| 157072 g6506 i0 82.222 56.0458515283843 270 42 58 5 1 267 2563 2829 Aphanomyces invadans hypothetical protein mRNA blastn 25669 228 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
15673706 15673706 PRJNA278119_P_NODE_11233_length_345_cov_1.875000_g10986_i0 PRJNA278119 11233 345 1.875 6.46875 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 202 3.06e-47   NTclustered gi|698791735|ref|XM_009830598.1| 112090 g10986 i0 81.967 30.2463768115942 244 38 70 6 105 345 554 314 Aphanomyces astaci malate dehydrogenase, NAD-dependent mRNA blastn 10435 202 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
15674212 15674212 PRJNA278119_P_NODE_46333_length_162_cov_1.380531_g46084_i0 PRJNA278119 46333 162 1.380531 2.23646022 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 137 3.6199999999999997e-28   NTclustered gi|813198519|ref|XM_012353453.1| 695850 g46084 i0 84.672 13.4259259259259 137 21 85 0 5 141 320 184 Saprolegnia parasitica CBS 223.65 succinate dehydrogenase iron-sulfur subunit mRNA blastn 2175 137 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
16948937 16948937 PRJNA278119_P_NODE_6554_length_466_cov_1.378897_g6308_i0 PRJNA278119 6554 466 1.378897 6.42566002 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 305 3.15e-78   NTclustered gi|813173920|ref|XM_012349524.1| 695850 g6308 i0 79.176 2.66738197424893 461 80 97 12 14 466 916 464 Saprolegnia parasitica CBS 223.65 tyrosyl-tRNA synthetase mRNA blastn 1243 305 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
19496964 19496964 PRJNA278119_P_NODE_1076_length_1168_cov_3.486148_g922_i0 PRJNA278119 1076 1168 3.486148 40.71820864 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 534 9.7e-147   NTclustered gi|166034915|emb|CU351915.1| 100861 g922 i0 79.02 54.3844178082192 796 155 68 10 146 935 61 850 Aphanomyces euteiches cDNA blastn 63521 534 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
20772564 20772564 PRJNA278119_P_NODE_1797_length_920_cov_1.517796_g1606_i0 PRJNA278119 1797 920 1.517796 13.9637232 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 466 2.8e-126   NTclustered gi|166050425|emb|CU356122.1| 100861 g1606 i0 79.285 16.645652173913 671 135 73 4 180 848 840 172 Aphanomyces euteiches cDNA blastn 15314 466 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
21460454 21460454 PRJNA278119_P_NODE_1357_length_1048_cov_2.059059_g1178_i0 PRJNA278119 1357 1048 2.059059 21.57893832 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 747 0   NTclustered gi|2795054652|ref|XM_067932801.1| 4785 g1178 i0 79.749 90.7261450381679 1037 184 98 21 25 1047 188 1212 Phytophthora cinnamomi ATP-dependent RNA helicase eIF4A (IUM83_08428), partial mRNA blastn 95081 747 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
22047873 22047873 PRJNA278119_P_NODE_378_length_1669_cov_8.166049_g308_i0 PRJNA278119 378 1669 8.166049 136.29135781 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 893 0   NTclustered gi|669151349|ref|XM_008613015.1| 1156394 g308 i0 78.471 67.407429598562 1426 264 84 35 235 1634 1543 135 Saprolegnia diclina VS20 adenosylhomocysteinase mRNA blastn 112503 893 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
22048065 22048065 PRJNA278119_P_NODE_7878_length_423_cov_2.446524_g7631_i0 PRJNA278119 7878 423 2.446524 10.34879652 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 110 2.38e-19   NTclustered gi|675176198|ref|XM_008898736.1| 761204 g7631 i0 85.577 2.96926713947991 104 15 25 0 320 423 540 437 Phytophthora parasitica INRA-310 iron sulfur cluster assembly protein 1 mRNA blastn 1256 110 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
23323470 23323470 PRJNA278119_P_NODE_42559_length_164_cov_2.591304_g42310_i0 PRJNA278119 42559 164 2.591304 4.24973856 Achlya klebsiana 4767 SAR_Eukaryotes SAR_Eukaryotes 193 7.73e-45   NTclustered gi|166301|gb|J05597.1|ACKBTUB 4767 g42310 i0 88.199 89.780487804878 161 19 98 0 3 163 1258 1418 A.klebsiana beta-tubulin gene, complete cds blastn 14724 193 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
24597232 24597232 PRJNA278119_P_NODE_18580_length_236_cov_1.112299_g18331_i0 PRJNA278119 18580 236 1.112299 2.62502564 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 248 2.52e-61   NTclustered gi|2795026083|ref|XM_067925526.1| 4785 g18331 i0 86.076 83.5423728813559 237 25 99 7 1 233 447 215 Phytophthora cinnamomi alanine-tRNA ligase (IUM83_01657), partial mRNA blastn 19716 248 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
24597570 24597570 PRJNA278119_P_NODE_41980_length_165_cov_0.896552_g41731_i0 PRJNA278119 41980 165 0.896552 1.4793108 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 148 1.71e-31   NTclustered gi|698781354|ref|XM_009825419.1| 112090 g41731 i0 83.133 1.00606060606061 166 24 99 3 2 165 494 331 Aphanomyces astaci hypothetical protein mRNA blastn 166 148 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
24597589 24597589 PRJNA278119_P_NODE_43040_length_164_cov_1.313043_g42791_i0 PRJNA278119 43040 164 1.313043 2.15339052 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 137 3.67e-28   NTclustered gi|673024575|ref|XM_008868027.1| 157072 g42791 i0 90.385 55.1341463414634 104 10 63 0 5 108 1184 1081 Aphanomyces invadans tubulin beta chain mRNA blastn 9042 137 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;