RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA278119" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA278119 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4198667 4198667 PRJNA278119_P_NODE_6384_length_472_cov_5.702128_g6138_i0 PRJNA278119 6384 472 5.702128 26.91404416 Pristionchus pauli 376545 Nematoda Nematoda 292 2.48e-74   NTclustered gi|150982019|gb|EF634598.1| 376545 g6138 i0 81.492 4.77966101694915 362 61 76 6 67 425 37 395 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2256 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
7436850 7436850 PRJNA278119_P_NODE_48206_length_153_cov_2.365385_g47957_i0 PRJNA278119 48206 153 2.365385 3.61903905 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 134 4.3500000000000006e-27   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g47957 i0 84.444 18.8366013071895 135 21 88 0 1 135 591 457 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 2882 134 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
14400432 14400432 PRJNA278119_P_NODE_42592_length_164_cov_2.017391_g42343_i0 PRJNA278119 42592 164 2.017391 3.30852124 Strongyloides papillosus 174720 Nematoda Nematoda 228 2.1199999999999996e-55   NTclustered gi|687022643|emb|LM525557.1| 174720 g42343 i0 91.975 97.5670731707317 162 13 99 0 1 162 538163 538002 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000003 blastn 16001 228 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
14400573 14400573 PRJNA278119_P_NODE_8072_length_417_cov_2.817935_g7825_i0 PRJNA278119 8072 417 2.817935 11.75078895 Pristionchus hoplostomus 1355913 Nematoda Nematoda 124 8.379999999999998e-24   NTclustered gi|524845312|gb|KC819366.1| 1355913 g7825 i0 93.902 20.0959232613909 82 5 20 0 186 267 264 183 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 8380 124 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
15673933 15673933 PRJNA278119_P_NODE_25833_length_194_cov_1.441379_g25584_i0 PRJNA278119 25833 194 1.441379 2.79627526 Pristionchus sp. 6 RS5101 358043 Nematoda Nematoda 163 7.41e-36   NTclustered gi|150981863|gb|EF634501.1| 358043 g25584 i0 82.609 96.9123711340206 184 32 95 0 1 184 619 436 Pristionchus sp. 6 RS5101 large subunit ribosomal protein 1 (rpl-1) mRNA, partial cds blastn 18801 163 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 6 RS5101
18222932 18222932 PRJNA278119_P_NODE_26475_length_192_cov_1.090909_g26226_i0 PRJNA278119 26475 192 1.090909 2.09454528 Strongyloides ratti 34506 Nematoda Nematoda 135 1.6e-27   NTclustered gi|1376142193|ref|XM_024651392.1| 34506 g26226 i0 85.827 2.54166666666667 127 18 66 0 66 192 401 275 Strongyloides ratti 60S ribosomal protein L23 (SRAE_2000054900), partial mRNA blastn 488 135 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;