RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA278119" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA278119 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5474567 5474567 PRJNA278119_P_NODE_21965_length_211_cov_1.635802_g21716_i0 PRJNA278119 21965 211 1.635802 3.45154222 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 270 4.7e-68   NTclustered gi|575456455|gb|CP007128.1| 861299 g21716 i0 90.431 21.7440758293839 209 15 98 4 2 208 3043824 3043619 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 4588 270 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
8024853 8024853 PRJNA278119_P_NODE_6867_length_455_cov_1.768473_g6620_i0 PRJNA278119 6867 455 1.768473 8.04655215 Longimicrobiales bacterium 2910168 Bacteria Bacteria 52.8 0.044   NTclustered gi|2621703510|emb|OY762557.1| 2910168 g6620 i0 100 0.0615384615384615 28 0 6 0 232 259 2248123 2248096 MAG: Longimicrobiales bacterium isolate c10e2151-7d97-4465-9cf7-a78a4796a63d genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
11850097 11850097 PRJNA278119_P_NODE_44850_length_163_cov_1.070175_g44601_i0 PRJNA278119 44850 163 1.070175 1.74438525 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 60.2 8.12e-5   NTclustered gi|2874253728|emb|OY969570.1| 412054 g44601 i0 87.037 1.92638036809816 54 5 32 1 69 120 1657155 1657102 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 314 60.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;