RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA278119" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA278119 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6749270 6749270 PRJNA278119_P_NODE_7746_length_427_cov_3.846561_g7499_i0 PRJNA278119 7746 427 3.846561 16.42481547 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 217 1.38e-51   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g7499 i0 80.208 57.3395784543326 288 57 67 0 2 289 408 121 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 24484 217 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8024824 8024824 PRJNA278119_P_NODE_48267_length_152_cov_2.388350_g48018_i0 PRJNA278119 48267 152 2.38835 3.630292 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 132 1.5500000000000002e-26   NTclustered gi|470437344|ref|XM_004338929.1| 1257118 g48018 i0 83.221 4.79605263157895 149 19 96 6 1 146 202 347 Acanthamoeba castellanii str. Neff chaperonin GroL, putative (ACA1_128510), partial mRNA blastn 729 132 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9299562 9299562 PRJNA278119_P_NODE_44428_length_163_cov_1.780702_g44179_i0 PRJNA278119 44428 163 1.780702 2.90254426 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 63.9 6.28e-6   NTclustered gi|470423206|ref|XM_004337526.1| 1257118 g44179 i0 97.297 0.398773006134969 37 1 23 0 2 38 488 452 Acanthamoeba castellanii str. Neff 3oxoacid CoA transferase 1 isoform 3, putative (ACA1_164100), partial mRNA blastn 65 63.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10575457 10575457 PRJNA278119_P_NODE_46209_length_162_cov_1.592920_g45960_i0 PRJNA278119 46209 162 1.59292 2.5805304 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 289 9.44e-74   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g45960 i0 98.765 7.90740740740741 162 2 100 0 1 162 142 303 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 1281 289 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
18222945 18222945 PRJNA278119_P_NODE_27535_length_188_cov_2.028777_g27286_i0 PRJNA278119 27535 188 2.028777 3.81410076 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 331 1.85e-86   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g27286 i0 98.404 96.0053191489362 188 3 100 0 1 188 565 378 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 18049 331 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
20772887 20772887 PRJNA278119_P_NODE_40117_length_166_cov_0.888889_g39868_i0 PRJNA278119 40117 166 0.888889 1.47555574 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 241 2.76e-59   NTclustered gi|300078498|gb|GU001160.1| 5755 g39868 i0 92.857 1.01204819277108 168 8 99 3 3 166 5758 5925 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 168 241 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24597432 24597432 PRJNA278119_P_NODE_3160_length_682_cov_2.034755_g2927_i0 PRJNA278119 3160 682 2.034755 13.8770291 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 374 1.28e-98   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g2927 i0 79.235 67.7683284457478 549 104 80 8 6 549 1 544 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 46218 374 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;