RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA278119" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA278119 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10574990 10574990 PRJNA278119_P_NODE_10249_length_365_cov_1.382911_g10002_i0 PRJNA278119 10249 365 1.382911 5.04762515 Haslea pseudostrearia 197756 SAR_Eukaryotes SAR_Eukaryotes 158 7.14e-34   NTclustered gi|2328347954|ref|NC_067578.1| 197756 g10002 i0 76.106 15.8849315068493 339 59 91 17 19 350 27910 27587 Haslea pseudostrearia strain SCCAP K-1594 mitochondrion, complete genome blastn 5798 158 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Haslea Haslea pseudostrearia
10575415 10575415 PRJNA278119_P_NODE_429_length_1612_cov_37.898912_g353_i0 PRJNA278119 429 1612 37.898912 610.93046144 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 422 1.0999999999999999e-112   NTclustered gi|657012367|gb|KF302531.1| 2850 g353 i0 87.637 62.7295285359802 364 43 45 2 254 616 23 385 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 101120 422 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
18222754 18222754 PRJNA278119_P_NODE_1435_length_1020_cov_2.001030_g1252_i0 PRJNA278119 1435 1020 2.00103 20.410506 Ditylum brightwellii 49249 SAR_Eukaryotes SAR_Eukaryotes 405 6.899999999999996e-108   NTclustered gi|398372885|gb|JX305463.1| 49249 g1252 i0 80.479 42.9107843137255 543 95 53 11 1 537 1145 1682 Ditylum brightwellii strain B-326 heat shock protein 70 (Hsp70) mRNA, complete cds blastn 43769 405 1 Eukaryota Sar   Bacillariophyta Mediophyceae Lithodesmiales Lithodesmiaceae Ditylum Ditylum brightwellii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;