RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA278119" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA278119 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8024552 8024552 PRJNA278119_P_NODE_2627_length_755_cov_1.699717_g2404_i0 PRJNA278119 2627 755 1.699717 12.83286335 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 1273 0   NTclustered gi|1624698158|ref|XM_029013947.1| 189622 g2404 i0 97.09 962.331125827815 756 21 100 1 1 755 1426 671 Babesia ovata endonuclease-reverse transcriptase (BOVATA_050300), partial mRNA blastn 726560 1273 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
8711392 8711392 PRJNA278119_P_NODE_16867_length_255_cov_1.228155_g16618_i0 PRJNA278119 16867 255 1.228155 3.13179525 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|915147562|ref|XM_013483157.1| 5804 g16618 i0 100 0.219607843137255 28 0 11 0 61 88 107 80 Eimeria maxima Chromosome I, complete genome, related partial mRNA blastn 56 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
22047881 22047881 PRJNA278119_P_NODE_38798_length_167_cov_0.881356_g38549_i0 PRJNA278119 38798 167 0.881356 1.47186452 Plasmodium sp. gorilla clade G2 880535 SAR_Eukaryotes SAR_Eukaryotes 111 2.28e-20   NTclustered gi|1620184133|ref|XM_028684993.1| 880535 g38549 i0 85.321 7.76646706586826 109 14 65 2 1 108 124 231 Plasmodium sp. gorilla clade G2 helicase 45 (PADL01_1468600), partial mRNA blastn 1297 111 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium sp. gorilla clade G2
23323257 23323257 PRJNA278119_P_NODE_26679_length_191_cov_1.633803_g26430_i0 PRJNA278119 26679 191 1.633803 3.12056373 Cryptosporidium sp. 1040 202485 SAR_Eukaryotes SAR_Eukaryotes 108 3.46e-19   NTclustered gi|27979983|gb|AY120918.1| 202485 g26430 i0 81.203 4.87958115183246 133 25 70 0 59 191 1092 960 Cryptosporidium sp. 1040 70 kDa heat shock protein gene, partial cds blastn 932 108 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium sp. 1040
24597316 24597316 PRJNA278119_P_NODE_24380_length_200_cov_1.357616_g24131_i0 PRJNA278119 24380 200 1.357616 2.715232 Plasmodium inui 52288 SAR_Eukaryotes SAR_Eukaryotes 58.4 3.73e-4   NTclustered gi|672207451|ref|XM_008821424.1| 1237626 g24131 i0 97.059 0.59 34 1 17 0 12 45 1371 1338 Plasmodium inui San Antonio 1 hypothetical protein partial mRNA blastn 118 58.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium inui
24597579 24597579 PRJNA278119_P_NODE_42600_length_164_cov_1.860870_g42351_i0 PRJNA278119 42600 164 1.86087 3.0518268 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 217 4.589999999999999e-52   NTclustered gi|1624692895|ref|XM_029011319.1| 189622 g42351 i0 94.326 94.969512195122 141 8 86 0 8 148 422 562 Babesia ovata heat shock 70 (BOVATA_024020), partial mRNA blastn 15575 217 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;