RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA278119" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA278119 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2921996 2921996 PRJNA278119_P_NODE_33143_length_172_cov_1.780488_g32894_i0 PRJNA278119 33143 172 1.780488 3.06243936 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 296 6.04e-76   NTclustered gi|76574296|gb|DQ139444.1| 171953 g32894 i0 97.674 98.5348837209302 172 4 100 0 1 172 946 775 Uncultured Acidobacteria bacterium clone CAL5 23S ribosomal RNA gene, partial sequence blastn 16948 296 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
13125345 13125345 PRJNA278119_P_NODE_46711_length_162_cov_0.920354_g46462_i0 PRJNA278119 46711 162 0.920354 1.49097348 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 143 7.78e-30   NTclustered gi|2814788339|emb|OY761475.2| 2910147 g46462 i0 85 0.864197530864197 140 21 86 0 4 143 7038398 7038537 MAG: Vicinamibacterales bacterium isolate 01def6b1-0c8c-435d-859a-076764f3ef92 genome assembly, chromosome: 1 blastn 140 143 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
24597637 24597637 PRJNA278119_P_NODE_46800_length_162_cov_0.920354_g46551_i0 PRJNA278119 46800 162 0.920354 1.49097348 Thermoanaerobaculaceae bacterium 2699758 Bacteria Bacteria 99 1.71e-16   NTclustered gi|2874254005|emb|OY970330.1| 2699758 g46551 i0 89.61 0.475308641975309 77 8 48 0 8 84 6361476 6361552 MAG: Thermoanaerobaculaceae bacterium isolate MFD05537.bin.c.1 genome assembly, chromosome: 1 blastn 77 99 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia Thermoanaerobaculales Thermoanaerobaculaceae   Thermoanaerobaculaceae bacterium
25284831 25284831 PRJNA278119_P_NODE_17780_length_244_cov_1.369231_g17531_i0 PRJNA278119 17780 244 1.369231 3.34092364 Luteitalea 2004797 Bacteria Bacteria 351 1.9399999999999998e-92   NTclustered gi|1016914409|gb|CP015136.1| 1855912 g17531 i0 92.713 194.19262295082 247 12 100 6 1 244 654915 655158 Luteitalea pratensis strain DSM 100886 chromosome, complete genome blastn 47383 351 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea pratensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;