RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA278119" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA278119 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7436661 7436661 PRJNA278119_P_NODE_18346_length_238_cov_1.375661_g18097_i0 PRJNA278119 18346 238 1.375661 3.27407318 Eukaryota 2759 Plants Plants 58.4 4.59e-4   NTclustered gi|302841517|ref|XM_002952258.1| 3068 g18097 i0 94.595 9.84033613445378 37 2 16 0 118 154 912 876 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_92929), partial mRNA blastn 2342 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
14400365 14400365 PRJNA278119_P_NODE_36632_length_168_cov_0.873950_g36383_i0 PRJNA278119 36632 168 0.87395 1.468236 Dunaliella viridis 140095 Plants Plants 63.9 6.52e-6   NTclustered gi|772311199|ref|NC_026571.1| 140095 g36383 i0 100 0.380952380952381 34 0 20 0 1 34 8886 8919 Dunaliella viridis strain CCM-UDEC 002 mitochondrion, complete genome blastn 64 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella viridis
24597173 24597173 PRJNA278119_P_NODE_14480_length_288_cov_0.983264_g14231_i0 PRJNA278119 14480 288 0.983264 2.83180032 Binuclearia lauterbornii 3087189 Plants Plants 80.5 1.22e-10   NTclustered gi|2724824417|gb|PP746559.1| 3087189 g14231 i0 85.366 0.847222222222222 82 7 27 4 60 138 273 194 Binuclearia lauterbornii culture SAG:68.94 mitochondrion, complete genome blastn 244 80.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Oocystaceae Binuclearia Binuclearia lauterbornii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;