RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA274362" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA274362 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2921158 2921158 PRJNA274362_S_NODE_22023_length_198_cov_1.449664_g21903_i0 PRJNA274362 22023 198 1.449664 2.87033472 Thaumatomonas sp. TMT002 407209 SAR_Eukaryotes SAR_Eukaryotes 198 2.0799999999999998e-46   NTclustered gi|116222112|gb|DQ980435.1| 407209 g21903 i0 91.608 71.6818181818182 143 12 72 0 48 190 716 574 Thaumatomonas sp. TMT002 actin gene, partial cds blastn 14193 198 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomonas Thaumatomonas sp. TMT002
2921380 2921380 PRJNA274362_S_NODE_31683_length_169_cov_1.725000_g31563_i0 PRJNA274362 31683 169 1.725 2.91525 Rosculus sp. VDelafont-2023a 3079709 SAR_Eukaryotes SAR_Eukaryotes 313 5.859999999999999e-81   NTclustered gi|2589370978|gb|OR644361.1| 3079709 g31563 i0 100 6.89349112426035 169 0 100 0 1 169 266 434 Rosculus sp. VDelafont-2023a isolate AJ1 small subunit ribosomal RNA gene, partial sequence blastn 1165 313 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp. VDelafont-2023a
3609092 3609092 PRJNA274362_S_NODE_20603_length_204_cov_0.832258_g20483_i0 PRJNA274362 20603 204 0.832258 1.69780632 Rosculus 373137 SAR_Eukaryotes SAR_Eukaryotes 372 1.2e-98   NTclustered gi|1002343679|gb|KU738557.1| 175275 g20483 i0 99.51 70.4313725490196 204 1 100 0 1 204 149 352 Uncultured Cercozoa clone agricultural_soil21 18S ribosomal RNA gene, partial sequence blastn 14368 372 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa
4198009 4198009 PRJNA274362_S_NODE_5724_length_352_cov_2.227723_g5604_i0 PRJNA274362 5724 352 2.227723 7.84158496 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 381 3.7399999999999987e-101   NTclustered gi|300676732|gb|GQ377662.1| 188950 g5604 i0 86.286 95.2982954545455 350 48 99 0 1 350 5 354 Bodomorpha minima alpha-tubulin (Atub) gene, partial cds blastn 33545 381 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
9298358 9298358 PRJNA274362_S_NODE_11608_length_258_cov_2.755981_g11488_i0 PRJNA274362 11608 258 2.755981 7.11043098 Rosculus sp. VDelafont-2023a 3079709 SAR_Eukaryotes SAR_Eukaryotes 466 7.08e-127   NTclustered gi|2589370978|gb|OR644361.1| 3079709 g11488 i0 100 12.046511627907 252 0 98 0 1 252 252 1 Rosculus sp. VDelafont-2023a isolate AJ1 small subunit ribosomal RNA gene, partial sequence blastn 3108 466 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp. VDelafont-2023a
15673026 15673026 PRJNA274362_S_NODE_12213_length_253_cov_2.725490_g12093_i0 PRJNA274362 12213 253 2.72549 6.8954897 Rosculus sp. VDelafont-2023a 3079709 SAR_Eukaryotes SAR_Eukaryotes 451 1.94e-122   NTclustered gi|2589370978|gb|OR644361.1| 3079709 g12093 i0 99.2 29.6758893280632 250 2 99 0 4 253 1101 852 Rosculus sp. VDelafont-2023a isolate AJ1 small subunit ribosomal RNA gene, partial sequence blastn 7508 451 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp. VDelafont-2023a
20772318 20772318 PRJNA274362_S_NODE_4617_length_388_cov_1.389381_g4497_i0 PRJNA274362 4617 388 1.389381 5.39079828 Rosculus sp. VDelafont-2023a 3079709 SAR_Eukaryotes SAR_Eukaryotes 715 0   NTclustered gi|2589370978|gb|OR644361.1| 3079709 g4497 i0 100 48.3556701030928 387 0 99 0 1 387 1966 1580 Rosculus sp. VDelafont-2023a isolate AJ1 small subunit ribosomal RNA gene, partial sequence blastn 18762 715 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp. VDelafont-2023a
24010566 24010566 PRJNA274362_S_NODE_5719_length_352_cov_2.570957_g5599_i0 PRJNA274362 5719 352 2.570957 9.04976864 Imbricatea 1736114 SAR_Eukaryotes SAR_Eukaryotes 329 1.37e-85   NTclustered gi|224549835|gb|FJ456916.1| 39717 g5599 i0 83.523 95.0085227272727 352 58 100 0 1 352 413 764 Paulinella chromatophora strain M0880/a actin gene, partial cds blastn 33443 329 1 Eukaryota Sar   Cercozoa Imbricatea Euglyphida Paulinellidae Paulinella Paulinella chromatophora

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;