RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA274362" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA274362 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3609113 3609113 PRJNA274362_S_NODE_27043_length_182_cov_1.172932_g26923_i0 PRJNA274362 27043 182 1.172932 2.13473624 Fimbriimonas 1005038 Bacteria Bacteria 230 6.659999999999998e-56   NTclustered gi|663071213|gb|CP007139.1| 661478 g26923 i0 89.56 126.263736263736 182 17 100 2 1 182 27641 27462 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 22980 230 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
11849449 11849449 PRJNA274362_S_NODE_36390_length_163_cov_1.368421_g36270_i0 PRJNA274362 36390 163 1.368421 2.23052623 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 252 1.25e-62   NTclustered gi|2076449834|gb|CP075365.1| 2682144 g36270 i0 95.031 18.5460122699387 161 6 99 2 1 161 1877852 1878010 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM2 chromosome blastn 3023 252 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
14399495 14399495 PRJNA274362_S_NODE_20152_length_205_cov_2.352564_g20032_i0 PRJNA274362 20152 205 2.352564 4.8227562 Fimbriimonas sp. 1936159 Bacteria Bacteria 241 3.56e-59   NTclustered gi|2778022393|emb|OZ123194.1| 1936159 g20032 i0 88.177 258.180487804878 203 22 99 2 1 203 1687590 1687790 MAG: Fimbriimonas sp. isolate MsE-30jul19-LR-01 genome assembly, chromosome: 1 blastn 52927 241 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
15673120 15673120 PRJNA274362_S_NODE_16833_length_221_cov_1.308140_g16713_i0 PRJNA274362 16833 221 1.30814 2.8909894 Armatimonadetes bacterium Uphvl-Ar2 2004468 Bacteria Bacteria 268 1.79e-67   NTclustered gi|1199101103|gb|CP021424.1| 2004468 g16713 i0 88.688 127.325791855204 221 24 100 1 1 221 2201298 2201517 Armatimonadetes bacterium Uphvl-Ar2 genome blastn 28139 268 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium Uphvl-Ar2
22735335 22735335 PRJNA274362_S_NODE_12258_length_253_cov_1.397059_g12138_i0 PRJNA274362 12258 253 1.397059 3.53455927 Armatimonadota 67819 Bacteria Bacteria 303 5.74e-78   NTclustered gi|663071213|gb|CP007139.1| 661478 g12138 i0 88.538 12.4901185770751 253 25 99 4 1 251 28894 29144 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 3160 303 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
22735443 22735443 PRJNA274362_S_NODE_4258_length_403_cov_1.435028_g4138_i0 PRJNA274362 4258 403 1.435028 5.78316284 Fimbriimonas 1005038 Bacteria Bacteria 540 6.7699999999999996e-149   NTclustered gi|663071213|gb|CP007139.1| 661478 g4138 i0 91.228 196.114143920596 399 32 99 3 4 401 28914 28518 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 79034 540 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;