contig_metadata
9 rows where analysis = "blastn", bioproject = "PRJNA274362" and tax_kingdom = "Thermotogati"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8711266 | 8711266 | PRJNA274362_S_NODE_25707_length_186_cov_1.138686_g25587_i0 | PRJNA274362 | 25707 | 186 | 1.138686 | 2.11795596 | Thermus | 270 | Bacteria | Bacteria | 344 | 2.34e-90 | NTclustered | gi|6983833|emb|Y18410.1| | 37636 | g25587 | i0 | 100 | 102.005376344086 | 186 | 0 | 100 | 0 | 1 | 186 | 359 | 544 | Thermus scotoductus 16S rRNA gene, strain ITI-252T | blastn | 18973 | 344 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Thermales | Thermaceae | Thermus | Thermus scotoductus | ||
| 9986711 | 9986711 | PRJNA274362_S_NODE_26508_length_183_cov_2.141791_g26388_i0 | PRJNA274362 | 26508 | 183 | 2.141791 | 3.91947753 | Deinococcus | 1298 | Bacteria | Bacteria | 339 | 1.07e-88 | NTclustered | gi|470478007|ref|NR_076423.1| | 68909 | g26388 | i0 | 100 | 207.590163934426 | 183 | 0 | 100 | 0 | 1 | 183 | 2641 | 2823 | Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence | blastn | 37989 | 339 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus geothermalis | ||
| 15086146 | 15086146 | PRJNA274362_S_NODE_14512_length_235_cov_1.682796_g14392_i0 | PRJNA274362 | 14512 | 235 | 1.682796 | 3.9545706 | Deinococcus | 1298 | Bacteria | Bacteria | 435 | 1.79e-117 | NTclustered | gi|470478007|ref|NR_076423.1| | 68909 | g14392 | i0 | 100 | 308.182978723404 | 235 | 0 | 100 | 0 | 1 | 235 | 260 | 26 | Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence | blastn | 72423 | 435 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus geothermalis | ||
| 15673299 | 15673299 | PRJNA274362_S_NODE_25413_length_187_cov_1.115942_g25293_i0 | PRJNA274362 | 25413 | 187 | 1.115942 | 2.08681154 | Trueperaceae bacterium | 2026798 | Bacteria | Bacteria | 296 | 6.7e-76 | NTclustered | gi|2621706202|emb|OY764543.1| | 2026798 | g25293 | i0 | 95.187 | 565.042780748663 | 187 | 9 | 100 | 0 | 1 | 187 | 2561012 | 2560826 | MAG: Trueperaceae bacterium isolate 617606ba-ac04-44ed-b980-3de5d93b502e genome assembly, chromosome: 1 | blastn | 105663 | 296 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Trueperales | Trueperaceae | Trueperaceae bacterium | |||
| 16361154 | 16361154 | PRJNA274362_S_NODE_8813_length_290_cov_1.423237_g8693_i0 | PRJNA274362 | 8813 | 290 | 1.423237 | 4.1273873 | Deinococcus | 1298 | Bacteria | Bacteria | 387 | 6.48e-103 | NTclustered | gi|1751871007|dbj|AP021849.1| | 57498 | g8693 | i0 | 93.487 | 352.248275862069 | 261 | 16 | 91 | 1 | 30 | 290 | 3060853 | 3061112 | Deinococcus grandis ATCC 43672 DNA, complete genome | blastn | 102152 | 387 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus grandis | ||
| 20184696 | 20184696 | PRJNA274362_S_NODE_3656_length_434_cov_1.363636_g3536_i0 | PRJNA274362 | 3656 | 434 | 1.363636 | 5.91818024 | Deinococcus | 1298 | Bacteria | Bacteria | 675 | 0 | NTclustered | gi|470483488|ref|NR_076595.1| | 310783 | g3536 | i0 | 94.713 | 229.942396313364 | 435 | 22 | 100 | 1 | 1 | 434 | 1027 | 593 | Deinococcus deserti strain VCD115 23S ribosomal RNA gene, complete sequence | blastn | 99795 | 678 | 0.995575221238938 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus deserti | ||
| 22047437 | 22047437 | PRJNA274362_S_NODE_8638_length_292_cov_2.794239_g8518_i0 | PRJNA274362 | 8638 | 292 | 2.794239 | 8.15917788 | Deinococcus geothermalis | 68909 | Bacteria | Bacteria | 540 | 4.74e-149 | NTclustered | gi|94554390|gb|CP000359.1| | 319795 | g8518 | i0 | 100 | 202.181506849315 | 292 | 0 | 100 | 0 | 1 | 292 | 327135 | 326844 | Deinococcus geothermalis DSM 11300, complete genome | blastn | 59037 | 540 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus geothermalis | ||
| 24010532 | 24010532 | PRJNA274362_S_NODE_32479_length_168_cov_1.478992_g32359_i0 | PRJNA274362 | 32479 | 168 | 1.478992 | 2.48470656 | Thermus | 270 | Bacteria | Bacteria | 300 | 4.56e-77 | NTclustered | gi|470468782|ref|NR_076136.1| | 37636 | g32359 | i0 | 98.81 | 144 | 168 | 2 | 100 | 0 | 1 | 168 | 2647 | 2814 | Thermus scotoductus strain SA-01 23S ribosomal RNA gene, complete sequence | blastn | 24192 | 300 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Thermales | Thermaceae | Thermus | Thermus scotoductus | ||
| 25284763 | 25284763 | PRJNA274362_S_NODE_9800_length_277_cov_2.780702_g9680_i0 | PRJNA274362 | 9800 | 277 | 2.780702 | 7.70254454 | Deinococcus | 1298 | Bacteria | Bacteria | 468 | 2.14e-127 | NTclustered | gi|470478007|ref|NR_076423.1| | 68909 | g9680 | i0 | 97.112 | 204.693140794224 | 277 | 8 | 100 | 0 | 1 | 277 | 1522 | 1246 | Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence | blastn | 56700 | 468 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus geothermalis |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;