RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA274362" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 6 ✖

bioproject 1

  • PRJNA274362 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2921085 2921085 PRJNA274362_S_NODE_18363_length_213_cov_1.884146_g18243_i0 PRJNA274362 18363 213 1.884146 4.01323098 Leptotrichia rugosa 3239302 Bacteria Bacteria 388 1.26e-103   NTclustered gi|2785246835|gb|CP165644.1| 3239302 g18243 i0 99.531 407.323943661972 213 1 100 0 1 213 1958367 1958579 Leptotrichia sp. HSP-334 chromosome, complete genome blastn 86760 388 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia rugosa
9298511 9298511 PRJNA274362_S_NODE_18888_length_211_cov_1.135802_g18768_i0 PRJNA274362 18888 211 1.135802 2.39654222 Leptotrichia sp. oral taxon 498 712368 Bacteria Bacteria 390 3.459999999999999e-104   NTclustered gi|1227268105|gb|CP016753.1| 712368 g18768 i0 100 98.3601895734597 211 0 100 0 1 211 594048 593838 Leptotrichia sp. oral taxon 498, complete genome blastn 20754 390 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 498
10574949 10574949 PRJNA274362_S_NODE_9209_length_284_cov_11.570213_g9089_i0 PRJNA274362 9209 284 11.570213 32.85940492 Cetobacterium somerae 188913 Bacteria Bacteria 514 2.78e-141   NTclustered gi|2201062197|gb|CP092519.1| 188913 g9089 i0 99.296 466.56338028169 284 2 100 0 1 284 49167 48884 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 132504 514 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
16361044 16361044 PRJNA274362_S_NODE_14253_length_237_cov_1.382979_g14133_i0 PRJNA274362 14253 237 1.382979 3.27766023 Leptotrichia 32067 Bacteria Bacteria 438 1.4e-118   NTclustered gi|1227268105|gb|CP016753.1| 712368 g14133 i0 100 382.362869198312 237 0 100 0 1 237 593855 593619 Leptotrichia sp. oral taxon 498, complete genome blastn 90620 438 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 498
24596765 24596765 PRJNA274362_S_NODE_28100_length_179_cov_1.023077_g27980_i0 PRJNA274362 28100 179 1.023077 1.83130783 Fusobacterium gastrosuis 1755100 Bacteria Bacteria 320 3.76e-83   NTclustered gi|1795735174|emb|LT607734.1| 1755100 g27980 i0 98.883 490.994413407821 179 2 100 0 1 179 345403 345581 Fusobacterium sp. P6 Po strain Fusobacterium gastrosuis sp. nov. CDW1, P6 Po genome assembly, chromosome: chr blastn 87888 320 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium gastrosuis
25284740 25284740 PRJNA274362_S_NODE_37000_length_163_cov_0.807018_g36880_i0 PRJNA274362 37000 163 0.807018 1.31543934 root 1 Root_unresolved Root_unresolved 302 1.22e-77   NTclustered gi|1973571794|gb|MW567136.1| 851 g36880 i0 100 107.858895705521 163 0 100 0 1 163 479 641 Fusobacterium nucleatum strain c15Ua_6_AN 16S ribosomal RNA gene, partial sequence blastn 17581 302 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;