RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA274362" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA274362 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
370814 370814 PRJNA274362_S_NODE_36021_length_164_cov_0.904348_g35901_i0 PRJNA274362 36021 164 0.904348 1.48313072 Chlamydomonas reinhardtii 3055 Plants Plants 117 4.79e-22   NTclustered gi|2082237132|ref|XM_001689609.2| 3055 g35901 i0 80.667 1.82926829268293 150 29 91 0 13 162 513 662 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g038400v5), mRNA blastn 300 117 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
5474312 5474312 PRJNA274362_S_NODE_7165_length_319_cov_1.622222_g7045_i0 PRJNA274362 7165 319 1.622222 5.17488818 Prototheca blaschkeae 328666 Plants Plants 300 9.67e-77   NTclustered gi|1159431138|gb|KX389282.1| 328666 g7045 i0 83.81 67.2539184952978 315 51 99 0 5 319 826 512 Prototheca blaschkeae isolate SAG-2064 alpha tubulin (TUA1) mRNA, complete cds blastn 21454 300 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca blaschkeae
8024233 8024233 PRJNA274362_S_NODE_5527_length_357_cov_2.701299_g5407_i0 PRJNA274362 5527 357 2.701299 9.64363743 Polytomella sp. Pringsheim 198.80 37502 Plants Plants 193 1.91e-44   NTclustered gi|28193497|emb|AJ439528.1| 37502 g5407 i0 77.313 77.0224089635854 335 70 93 5 4 335 584 253 Polytomella sp. 'Pringsheim 198.80' mRNA for 40S ribosomal protein s5 (rs5 gene) blastn 27497 193 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
24596544 24596544 PRJNA274362_S_NODE_17280_length_219_cov_0.858824_g17160_i0 PRJNA274362 17280 219 0.858824 1.88082456 Chlamydomonas reinhardtii 3055 Plants Plants 54.7 0.005   NTclustered gi|2082257431|ref|XM_043067004.1| 3055 g17160 i0 100 0.132420091324201 29 0 13 0 144 172 3514 3486 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_10g453500v5), mRNA blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;