RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA270367" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 2 ✖

bioproject 1

  • PRJNA270367 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
370180 370180 PRJNA270367_P_NODE_44861_length_164_cov_0.904348_g44656_i0 PRJNA270367 44861 164 0.904348 1.48313072 Thermococcus sp. 9oN-7 103799 Archaea Archaea 298 1.59e-76   NTclustered gi|1197451|gb|U47108.1|TSU47108 103799 g44656 i0 99.39 26.6463414634146 164 1 100 0 1 164 1144 981 Thermococcus sp. DNA polymerase A (PolA) gene, complete cds blastn 4370 298 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp. 9oN-7
8711024 8711024 PRJNA270367_P_NODE_44567_length_164_cov_0.904348_g44362_i0 PRJNA270367 44567 164 0.904348 1.48313072 Sulfolobaceae 118883 Archaea Archaea 65.8 1.76e-6   NTclustered gi|1772811436|gb|CP045687.1| 2663019 g44362 i0 88.889 0.658536585365854 54 4 32 2 66 118 1836261 1836209 Saccharolobus sp. E5-1-F chromosome, complete genome blastn 108 65.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus sp. E5-1-F

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;