RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA270367" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA270367 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11848522 11848522 PRJNA270367_P_NODE_15850_length_318_cov_1.185874_g15645_i0 PRJNA270367 15850 318 1.185874 3.77107932 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 63.9 1.38e-5   NTclustered gi|2806466521|ref|XM_068506468.1| 1144522 g15645 i0 95.122 0.128930817610063 41 1 13 1 174 214 2164 2203 Tritrichomonas foetus uncharacterized protein (TRFO_28932), partial mRNA blastn 41 63.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
20771486 20771486 PRJNA270367_P_NODE_25797_length_225_cov_1.477273_g25592_i0 PRJNA270367 25797 225 1.477273 3.32386425 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 62.1 3.32e-5   NTclustered gi|2319647530|ref|XM_001581711.2| 412133 g25592 i0 94.872 0.173333333333333 39 2 17 0 175 213 1323 1361 Trichomonas vaginalis G3 uncharacterized protein (TVAGG3_0323080), partial mRNA blastn 39 62.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;