RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA270367" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA270367 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
369977 369977 PRJNA270367_P_NODE_23421_length_241_cov_0.807292_g23216_i0 PRJNA270367 23421 241 0.807292 1.94557372 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 156 1.6100000000000002e-33   NTclustered gi|2119429492|ref|XM_044701888.1| 5763 g23216 i0 79.039 14.7759336099585 229 46 95 2 7 234 546 319 Naegleria fowleri uncharacterized protein (FDP41_011476), partial mRNA blastn 3561 156 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
9298166 9298166 PRJNA270367_P_NODE_39668_length_169_cov_0.866667_g39463_i0 PRJNA270367 39668 169 0.866667 1.46466723 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 287 3.55e-73   NTclustered gi|290988713|ref|XM_002676993.1| 5762 g39463 i0 98.171 3.81065088757396 164 3 97 0 6 169 653 490 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_36760), mRNA blastn 644 287 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
13123739 13123739 PRJNA270367_P_NODE_19531_length_274_cov_2.320000_g19326_i0 PRJNA270367 19531 274 2.32 6.3568 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 278 3.8100000000000005e-70   NTclustered gi|290995790|ref|XM_002680420.1| 5762 g19326 i0 85.036 75.492700729927 274 39 99 2 1 273 1061 789 Naegleria gruberi vacuolar ATP synthase subunit B (NAEGRDRAFT_55664), mRNA blastn 20685 278 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
16947425 16947425 PRJNA270367_P_NODE_31974_length_195_cov_1.424658_g31769_i0 PRJNA270367 31974 195 1.424658 2.7780831 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 128 2.72e-25   NTclustered gi|2119421993|ref|XM_044690502.1| 51637 g31769 i0 81.935 2.4 155 24 78 4 39 191 1908 1756 Naegleria lovaniensis uncharacterized protein (C9374_014507), partial mRNA blastn 468 128 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
18221865 18221865 PRJNA270367_P_NODE_44335_length_164_cov_0.904348_g44130_i0 PRJNA270367 44335 164 0.904348 1.48313072 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 91.6 2.9e-14   NTclustered gi|290979179|ref|XM_002672266.1| 5762 g44130 i0 83.505 0.591463414634146 97 16 59 0 11 107 947 1043 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_52264), partial mRNA blastn 97 91.6 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
20771641 20771641 PRJNA270367_P_NODE_44877_length_164_cov_0.904348_g44672_i0 PRJNA270367 44877 164 0.904348 1.48313072 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 106 1.04e-18   NTclustered gi|290996699|ref|XM_002680874.1| 5762 g44672 i0 79.221 4.03658536585366 154 30 93 2 6 158 342 190 Naegleria gruberi mitochondrial chaperonin cpn60 (NAEGRDRAFT_35568), partial mRNA blastn 662 106 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
23322042 23322042 PRJNA270367_P_NODE_27859_length_214_cov_1.296970_g27654_i0 PRJNA270367 27859 214 1.29697 2.7755158 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 340 3.59e-89   NTclustered gi|290975864|ref|XM_002670616.1| 5762 g27654 i0 95.349 14.4485981308411 215 8 100 2 1 214 470 683 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_55913), mRNA blastn 3092 340 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
23322144 23322144 PRJNA270367_P_NODE_38399_length_172_cov_1.268293_g38194_i0 PRJNA270367 38399 172 1.268293 2.18146396 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 158 2.9699999999999993e-34   NTclustered gi|2031921538|emb|OD955557.1| 5763 g38194 i0 83.237 7.02325581395349 173 27 100 2 1 172 7140 7311 Naegleria fowleri Karachi_NF001 strain blastn 1208 158 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
23322185 23322185 PRJNA270367_P_NODE_42419_length_166_cov_0.888889_g42214_i0 PRJNA270367 42419 166 0.888889 1.47555574 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 54.7 0.004   NTclustered gi|290994125|ref|XM_002679637.1| 5762 g42214 i0 100 0.403614457831325 29 0 17 0 98 126 14017 14045 Naegleria gruberi midasin (NAEGRDRAFT_78945), partial mRNA blastn 67 54.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;