RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA270367" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA270367 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4197021 4197021 PRJNA270367_P_NODE_1704_length_1074_cov_3.447805_g1551_i0 PRJNA270367 1704 1074 3.447805 37.0294257 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 73.1 8.38e-8   NTclustered gi|2874254091|emb|OY970174.1| 171953 g1551 i0 84.416 0.138733705772812 77 8 7 2 717 791 2496985 2496911 MAG: uncultured Acidobacteriota bacterium isolate MFD01275.bin.c.18 genome assembly, chromosome: 1 blastn 149 73.1 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
11261383 11261383 PRJNA270367_P_NODE_35749_length_181_cov_1.340909_g35544_i0 PRJNA270367 35749 181 1.340909 2.42704529 Holophagaceae 574976 Bacteria Bacteria 62.1 2.55e-5   NTclustered gi|2490891634|dbj|AP027080.1| 2927979 g35544 i0 87.5 7.45303867403315 56 4 29 1 28 80 4930518 4930463 Mesoterricola silvestris W79 DNA, complete genome blastn 1349 62.1 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Mesoterricola Mesoterricola silvestris
15672724 15672724 PRJNA270367_P_NODE_26513_length_221_cov_1.331395_g26308_i0 PRJNA270367 26513 221 1.331395 2.94238295 Geothrix sp. 21YS21S-2 3068893 Bacteria Bacteria 52.8 0.02   NTclustered gi|2566094019|gb|CP132910.1| 3068893 g26308 i0 100 0.126696832579186 28 0 13 0 4 31 3145768 3145741 Geothrix sp. 21YS21S-2 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp. 21YS21S-2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;