RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA263496" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA263496 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2919802 2919802 PRJNA263496_P_NODE_16063_length_195_cov_1.013699_g15810_i0 PRJNA263496 16063 195 1.013699 1.97671305 Styela clava 7725 Chordata Chordata 154 4.49e-33   NTclustered gi|1981797028|ref|XM_039410261.1| 7725 g15810 i0 82.584 4.22051282051282 178 27 90 3 12 187 117 292 PREDICTED: Styela clava 60S ribosomal protein L10-like (LOC120341687), transcript variant X1, mRNA blastn 823 154 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
2920009 2920009 PRJNA263496_P_NODE_22923_length_165_cov_0.879310_g22670_i0 PRJNA263496 22923 165 0.87931 1.4508615 Pleurodeles waltl 8319 Chordata Chordata 113 6.240000000000001e-21   NTclustered gi|2833248726|ref|XM_069206959.1| 8319 g22670 i0 81.618 27.2 136 25 82 0 30 165 258 393 PREDICTED: Pleurodeles waltl ras-related protein ORAB-1-like (LOC138259323), transcript variant X2, mRNA blastn 4488 113 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
6746794 6746794 PRJNA263496_P_NODE_13526_length_212_cov_2.815951_g13273_i0 PRJNA263496 13526 212 2.815951 5.96981612 Xenopus laevis 8355 Chordata Chordata 52.8 0.019   NTclustered gi|2038222965|ref|XM_041565031.1| 8355 g13273 i0 100 2.24528301886792 28 0 13 0 129 156 5263 5290 PREDICTED: Xenopus laevis myelin transcription factor 1-like protein (LOC108718228), transcript variant X5, mRNA blastn 476 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
9297487 9297487 PRJNA263496_P_NODE_2608_length_563_cov_2.496109_g2365_i0 PRJNA263496 2608 563 2.496109 14.05309367 Bombina bombina 8345 Chordata Chordata 453 1.3e-122   NTclustered gi|2445292579|ref|XM_053720092.1| 8345 g2365 i0 81.239 99.2220248667851 565 102 100 4 1 563 1048 486 PREDICTED: Bombina bombina actin, cytoplasmic 1-like (LOC128665858), mRNA blastn 55862 453 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
16946406 16946406 PRJNA263496_P_NODE_13454_length_213_cov_1.451220_g13201_i0 PRJNA263496 13454 213 1.45122 3.0910986 Mus musculus 10090 Chordata Chordata 52.8 0.019   NTclustered gi|57470703|gb|AC151530.2| 10090 g13201 i0 100 0.262910798122066 28 0 13 0 69 96 152814 152841 Mus musculus BAC clone RP24-330K6 from 13, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
18908645 18908645 PRJNA263496_P_NODE_21995_length_166_cov_0.871795_g21742_i0 PRJNA263496 21995 166 0.871795 1.4471797 Bovidae 9895 Chordata Chordata 54.7 0.004   NTclustered gi|1062963557|ref|XM_005678338.3| 9925 g21742 i0 96.875 3.08433734939759 32 1 19 0 126 157 5153 5184 PREDICTED: Capra hircus nuclear factor I A (NFIA), transcript variant X3, mRNA blastn 512 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Capra Capra hircus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;