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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA263496" and tax_clade = "Sar"

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tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA263496 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
369200 369200 PRJNA263496_P_NODE_18721_length_179_cov_1.569231_g18468_i0 PRJNA263496 18721 179 1.569231 2.80892349 Miliammina fusca 302103 SAR_Eukaryotes SAR_Eukaryotes 193 8.56e-45   NTclustered gi|59859617|gb|AY763994.1| 302103 g18468 i0 86.188 74.1508379888268 181 21 100 4 1 179 271 93 Miliammina fusca clone MmA1318_41 actin type 2 gene, partial cds blastn 13273 193 1 Eukaryota Sar   Foraminifera     Rzehakinidae Miliammina Miliammina fusca
369307 369307 PRJNA263496_P_NODE_22181_length_166_cov_0.871795_g21928_i0 PRJNA263496 22181 166 0.871795 1.4471797 Salilagenidium thermophilum 135484 SAR_Eukaryotes SAR_Eukaryotes 302 1.2500000000000001e-77   NTclustered gi|146760372|dbj|AB285219.1| 135484 g21928 i0 99.398 98.3734939759036 166 1 100 0 1 166 548 383 Lagenidium thermophilum gene for 28S large subunit ribosomal RNA, partial sequence blastn 16330 302 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Lagenidiaceae Salilagenidium Salilagenidium thermophilum
2332480 2332480 PRJNA263496_P_NODE_18522_length_180_cov_1.557252_g18269_i0 PRJNA263496 18522 180 1.557252 2.8030536 Tursiocola 2291634 SAR_Eukaryotes SAR_Eukaryotes 73.1 1.17e-8   NTclustered gi|1442831271|gb|MH017621.1| 2291635 g18269 i0 100 17.7222222222222 39 0 22 0 119 157 135 173 Tursiocola ziemanii voucher WGA voucher FLManM99TurWGA12 large subunit ribosomal RNA gene, partial sequence blastn 3190 73.1 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Cymbellales Rhoicospheniaceae Tursiocola Tursiocola ziemanii
3607716 3607716 PRJNA263496_P_NODE_25323_length_161_cov_0.991071_g25070_i0 PRJNA263496 25323 161 0.991071 1.59562431 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 183 4.55e-42   NTclustered gi|6688976|emb|AJ249839.1| 4787 g25070 i0 88.235 95.0310559006211 153 18 95 0 9 161 1279 1127 Phytophthora infestans partial mRNA for translation elongation factor 1 alpha (tef1 gene) blastn 15300 183 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
8022732 8022732 PRJNA263496_P_NODE_21547_length_167_cov_0.864407_g21294_i0 PRJNA263496 21547 167 0.864407 1.44355969 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 134 4.86e-27   NTclustered gi|2794906124|ref|XM_067889988.1| 164328 g21294 i0 82.667 3.39520958083832 150 26 90 0 1 150 588 439 Phytophthora ramorum 60S ribosomal protein L3 (KRP23_4970), partial mRNA blastn 567 134 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
15672120 15672120 PRJNA263496_P_NODE_24293_length_163_cov_0.894737_g24040_i0 PRJNA263496 24293 163 0.894737 1.45842131 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 167 4.649999999999999e-37   NTclustered gi|675205738|ref|XM_008913506.1| 761204 g24040 i0 85.276 5.5521472392638 163 23 99 1 1 162 443 605 Phytophthora parasitica INRA-310 40S ribosomal protein S18 mRNA blastn 905 167 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
18221079 18221079 PRJNA263496_P_NODE_25375_length_161_cov_0.910714_g25122_i0 PRJNA263496 25375 161 0.910714 1.46624954 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 58.4 2.87e-4   NTclustered gi|1620139151|ref|XM_028675269.1| 85471 g25122 i0 94.737 0.236024844720497 38 1 24 1 24 61 1540 1576 Plasmodium relictum clp1-related protein, putative (PRELSG_0502300), partial mRNA blastn 38 58.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
22045653 22045653 PRJNA263496_P_NODE_13058_length_217_cov_0.910714_g12805_i0 PRJNA263496 13058 217 0.910714 1.97624938 Pyrocystis lunula 2972 SAR_Eukaryotes SAR_Eukaryotes 254 4.9e-63   NTclustered gi|27450758|gb|AF508263.1| 2972 g12805 i0 91.803 82.2442396313364 183 13 84 2 36 217 1142 961 Pyrocystis lunula actin mRNA, complete cds blastn 17847 254 1 Eukaryota Sar     Dinophyceae Gonyaulacales Pyrocystaceae Pyrocystis Pyrocystis lunula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;