RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA263496" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA263496 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6746982 6746982 PRJNA263496_P_NODE_18966_length_178_cov_1.186047_g18713_i0 PRJNA263496 18966 178 1.186047 2.11116366 Endolimax piscium 1284676 Evosea other_Eukaryota 150 5.19e-32   NTclustered gi|443299289|gb|JX101954.1| 1284676 g18713 i0 83.237 3.94943820224719 173 20 93 7 13 178 1900 2070 Endolimax piscium clone PM1 18S ribosomal RNA gene, partial sequence blastn 703 150 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Endolimax Endolimax piscium
15672028 15672028 PRJNA263496_P_NODE_20453_length_170_cov_1.264463_g20200_i0 PRJNA263496 20453 170 1.264463 2.1495871 Endolimax piscium 1284676 Evosea other_Eukaryota 182 1.74e-41   NTclustered gi|443299289|gb|JX101954.1| 1284676 g20200 i0 86.55 55.7117647058824 171 15 100 5 1 170 1753 1916 Endolimax piscium clone PM1 18S ribosomal RNA gene, partial sequence blastn 9471 182 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Endolimax Endolimax piscium
15672056 15672056 PRJNA263496_P_NODE_21653_length_166_cov_1.307692_g21400_i0 PRJNA263496 21653 166 1.307692 2.17076872 Endolimax piscium 1284676 Evosea other_Eukaryota 233 4.63e-57   NTclustered gi|443299289|gb|JX101954.1| 1284676 g21400 i0 92.216 4.18674698795181 167 10 99 2 3 166 1337 1171 Endolimax piscium clone PM1 18S ribosomal RNA gene, partial sequence blastn 695 233 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Endolimax Endolimax piscium
18221182 18221182 PRJNA263496_P_NODE_5115_length_370_cov_1.757009_g4862_i0 PRJNA263496 5115 370 1.757009 6.5009333 Cavenderia fasciculata 261658 Evosea other_Eukaryota 52.8 0.035   NTclustered gi|470239771|ref|XM_004351803.1| 261658 g4862 i0 100 0.0756756756756757 28 0 8 0 59 86 497 524 Cavenderia fasciculata pleckstrin domain-containing protein (DFA_09959), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;