RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA255848" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA255848 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1056840 1056840 PRJNA255848_P_NODE_12881_length_282_cov_1.626609_g12563_i0 PRJNA255848 12881 282 1.626609 4.58703738 Terriglobus 392733 Bacteria Bacteria 457 4.72e-124   NTclustered gi|1085637902|emb|LT629690.1| 392734 g12563 i0 97.048 98.2340425531915 271 8 96 0 12 282 4807907 4807637 Terriglobus roseus strain GAS232 genome assembly, chromosome: I blastn 27702 457 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus roseus
5472113 5472113 PRJNA255848_P_NODE_44745_length_162_cov_1.053097_g44427_i0 PRJNA255848 44745 162 1.053097 1.70601714 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 248 1.6e-61   NTclustered gi|2874253796|emb|OY969780.1| 194844 g44427 i0 94.41 31.8518518518519 161 9 99 0 1 161 285177 285017 MAG: uncultured Acidobacteriaceae bacterium isolate MFD09603.bin.c.4 genome assembly, chromosome: 1 blastn 5160 248 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
16359298 16359298 PRJNA255848_P_NODE_16533_length_245_cov_2.051020_g16215_i0 PRJNA255848 16533 245 2.05102 5.024999 Terriglobus 392733 Bacteria Bacteria 436 5.229999999999999e-118   NTclustered gi|319923767|gb|CP002467.1| 401053 g16215 i0 98.776 120.534693877551 245 3 100 0 1 245 3869452 3869696 Terriglobus saanensis SP1PR4, complete genome blastn 29531 436 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus saanensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;