RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA255848" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA255848 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6746472 6746472 PRJNA255848_P_NODE_47066_length_161_cov_0.910714_g46748_i0 PRJNA255848 47066 161 0.910714 1.46624954 Chlamydomonas incerta 51695 Plants Plants 124 2.7899999999999998e-24   NTclustered gi|74272606|gb|DQ122868.1| 51695 g46748 i0 85.124 8.51552795031056 121 18 75 0 21 141 293 413 Chlamydomonas incerta 40S ribosomal protein S3 mRNA, complete cds blastn 1371 124 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
10572731 10572731 PRJNA255848_P_NODE_31369_length_177_cov_1.664062_g31051_i0 PRJNA255848 31369 177 1.664062 2.94538974 Trebouxia sp. 2796353 Plants Plants 327 2.2199999999999996e-85   NTclustered gi|2154806906|gb|OL614649.1| 2796353 g31051 i0 100 99.6779661016949 177 0 100 0 1 177 593 769 Trebouxia sp. clone QJ3-4 small subunit ribosomal RNA gene, partial sequence blastn 17643 327 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp.
13122517 13122517 PRJNA255848_P_NODE_38231_length_166_cov_0.871795_g37913_i0 PRJNA255848 38231 166 0.871795 1.4471797 Chlamydomonas reinhardtii 3055 Plants Plants 171 3.68e-38   NTclustered gi|2082266740|ref|XM_043070785.1| 3055 g37913 i0 85.629 96.1927710843374 167 18 99 4 3 166 226 63 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_16g650300v5), mRNA blastn 15968 171 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;