RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA242641" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA242641 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12535257 12535257 PRJNA242641_S_NODE_1950_length_167_cov_2.731884_g1922_i0 PRJNA242641 1950 167 2.731884 4.56224628 Lampetra 13103 Chordata Chordata 307 2.71e-79   NTclustered gi|2805738660|emb|OZ078456.1| 7748 g1922 i0 100 116.155688622754 166 0 99 0 1 166 1826943 1826778 Lampetra fluviatilis genome assembly, chromosome: 53 blastn 19398 307 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
21458398 21458398 PRJNA242641_S_NODE_1377_length_198_cov_2.201183_g1349_i0 PRJNA242641 1377 198 2.201183 4.35834234 root 1 Root_unresolved Root_unresolved 361 2.51e-95   NTclustered gi|698|emb|V00121.1| 9913 g1349 i0 99.495 6 198 1 100 0 1 198 222 25 Bovine satellite DNA fragment blastn 1188 361 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
24008627 24008627 PRJNA242641_S_NODE_2099_length_161_cov_2.939394_g2071_i0 PRJNA242641 2099 161 2.939394 4.73242434 Bovidae 9895 Chordata Chordata 287 3.37e-73   NTclustered gi|2633821344|ref|XR_009734020.1| 9906 g2071 i0 99.367 990.484472049689 158 1 98 0 1 158 897 1054 PREDICTED: Bos javanicus uncharacterized LOC133239870 (LOC133239870), ncRNA blastn 159468 287 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;