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contig_metadata

29 rows where analysis = "blastn", bioproject = "PRJNA242641" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 29 ✖

bioproject 1

  • PRJNA242641 · 29 ✖

analysis 1

  • blastn · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
367430 367430 PRJNA242641_S_NODE_1801_length_173_cov_2.562500_g1773_i0 PRJNA242641 1801 173 2.5625 4.433125 Persea americana 3435 Plants Plants 320 3.61e-83   NTclustered gi|20416|emb|X59944.1| 3435 g1773 i0 100 2 173 0 100 0 1 173 1773 1601 P.americana cel1 gene for cellulase (endo-beta-1,4-glucanase) blastn 346 320 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
1642225 1642225 PRJNA242641_S_NODE_362_length_383_cov_5.067797_g334_i0 PRJNA242641 362 383 5.067797 19.40966251 Camellia sinensis 4442 Plants Plants 100 1.29e-16   NTclustered gi|1585775693|ref|XM_028226777.1| 4442 g334 i0 80.576 0.362924281984334 139 19 36 4 165 302 207 76 PREDICTED: Camellia sinensis arabinogalactan protein 23-like (LOC114283894), mRNA blastn 139 100 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Theaceae Camellia Camellia sinensis
2331937 2331937 PRJNA242641_S_NODE_822_length_253_cov_8.044643_g794_i0 PRJNA242641 822 253 8.044643 20.35294679 Eukaryota 2759 Plants Plants 464 2.49e-126   NTclustered gi|2279971571|gb|ON243850.1| 4606 g794 i0 99.605 99.9802371541502 253 1 100 0 1 253 3065 3317 Lolium arundinaceum isolate Farund5 external transcribed spacer, partial sequence; and small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 25295 468 0.991452991452991 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium arundinaceum
2918041 2918041 PRJNA242641_S_NODE_1183_length_210_cov_13.734807_g1155_i0 PRJNA242641 1183 210 13.734807 28.8430947 Triticum monococcum 4568 Plants Plants 361 2.6999999999999998e-95   NTclustered gi|2581913088|emb|OY737865.1| 4568 g1155 i0 97.619 2403.39047619048 210 5 100 0 1 210 38711730 38711521 Triticum monococcum genome assembly, chromosome: UA blastn 504712 361 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum monococcum
2918043 2918043 PRJNA242641_S_NODE_843_length_250_cov_1.742081_g815_i0 PRJNA242641 843 250 1.742081 4.3552025 Macadamia integrifolia 60698 Plants Plants 309 1.22e-79   NTclustered gi|2070771201|ref|XM_042656720.1| 60698 g815 i0 89.113 7.368 248 27 99 0 3 250 389 636 PREDICTED: Macadamia integrifolia LIM domain-containing protein WLIM2b-like (LOC122087552), transcript variant X2, mRNA blastn 1842 309 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Proteales Proteaceae Macadamia Macadamia integrifolia
4194530 4194530 PRJNA242641_S_NODE_2164_length_159_cov_3.384615_g2136_i0 PRJNA242641 2164 159 3.384615 5.38153785 Persea americana 3435 Plants Plants 294 1.98e-75   NTclustered gi|166950|gb|L06094.1|AVOPOLYGAL 3435 g2136 i0 100 2.0062893081761 159 0 100 0 1 159 1336 1178 Avacado polygalacturonase mRNA, complete cds blastn 319 294 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
5470794 5470794 PRJNA242641_S_NODE_185_length_531_cov_4.041833_g165_i0 PRJNA242641 185 531 4.041833 21.46213323 Persea americana 3435 Plants Plants 981 0   NTclustered gi|166946|gb|M17634.1|AVOCEL 3435 g165 i0 100 14.7984934086629 531 0 100 0 1 531 1866 1336 Avocado cellulase (endo-(1-4)-beta-n-glucanase), complete cds blastn 7858 981 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
5470795 5470795 PRJNA242641_S_NODE_2105_length_161_cov_2.045455_g2077_i0 PRJNA242641 2105 161 2.045455 3.29318255 Persea americana 3435 Plants Plants 298 1.56e-76   NTclustered gi|166950|gb|L06094.1|AVOPOLYGAL 3435 g2077 i0 100 2 161 0 100 0 1 161 641 801 Avacado polygalacturonase mRNA, complete cds blastn 322 298 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
6745106 6745106 PRJNA242641_S_NODE_546_length_313_cov_2.873239_g518_i0 PRJNA242641 546 313 2.873239 8.99323807 Populus euphratica 75702 Plants Plants 220 7.58e-53   NTclustered gi|743923423|ref|XM_011007502.1| 75702 g518 i0 83.913 42.3194888178914 230 37 73 0 77 306 1304 1075 PREDICTED: Populus euphratica glutelin type-B 5-like (LOC105111973), mRNA blastn 13246 220 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Salicaceae Populus Populus euphratica
7434592 7434592 PRJNA242641_S_NODE_306_length_416_cov_3.860465_g278_i0 PRJNA242641 306 416 3.860465 16.0595344 Quercus 3511 Plants Plants 209 2.24e-49   NTclustered gi|2293142496|ref|XM_050389189.1| 38942 g278 i0 82.906 7.86778846153846 234 38 56 2 153 385 441 209 PREDICTED: Quercus robur cysteine proteinase inhibitor 12-like (LOC126693269), transcript variant X8, mRNA blastn 3273 209 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus robur
8020838 8020838 PRJNA242641_S_NODE_1067_length_224_cov_2.661538_g1039_i0 PRJNA242641 1067 224 2.661538 5.9618451200000004 Persea americana 3435 Plants Plants 414 2.1999999999999996e-111   NTclustered gi|166946|gb|M17634.1|AVOCEL 3435 g1039 i0 100 28.8839285714286 224 0 100 0 1 224 957 1180 Avocado cellulase (endo-(1-4)-beta-n-glucanase), complete cds blastn 6470 414 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
8709359 8709359 PRJNA242641_S_NODE_2207_length_157_cov_10.445312_g2179_i0 PRJNA242641 2207 157 10.445312 16.39913984 Eukaryota 2759 Plants Plants 285 1.17e-72   NTclustered gi|1877194149|gb|MT784108.1| 4509 g2179 i0 99.363 1138.68789808917 157 1 100 0 1 157 1404 1248 Dactylis glomerata isolate DM138 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, region blastn 178774 285 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Dactylis Dactylis glomerata
9295511 9295511 PRJNA242641_S_NODE_928_length_240_cov_2.355450_g900_i0 PRJNA242641 928 240 2.35545 5.65308 Persea americana 3435 Plants Plants 444 3.05e-120   NTclustered gi|166948|gb|M32885.1|AVOCYP 3435 g900 i0 100 3.5625 240 0 100 0 1 240 914 1153 Avocado cytochrome P-450LXXIA1 (cyp71A1) mRNA, complete cds blastn 855 444 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
11259875 11259875 PRJNA242641_S_NODE_529_length_315_cov_23.751748_g501_i0 PRJNA242641 529 315 23.751748 74.8180062 root 1 Root_unresolved Root_unresolved 582 8.459999999999998e-162   NTclustered gi|2307846552|gb|OM049559.1| 4509 g501 i0 100 198 315 0 100 0 1 315 91652 91338 Dactylis glomerata voucher Da_g_1 chloroplast, complete genome blastn 62370 582 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Dactylis Dactylis glomerata
13121238 13121238 PRJNA242641_S_NODE_1711_length_177_cov_2.054054_g1683_i0 PRJNA242641 1711 177 2.054054 3.63567558 Persea americana 3435 Plants Plants 327 2.2199999999999996e-85   NTclustered gi|166948|gb|M32885.1|AVOCYP 3435 g1683 i0 100 1 177 0 100 0 1 177 238 62 Avocado cytochrome P-450LXXIA1 (cyp71A1) mRNA, complete cds blastn 177 327 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
15084234 15084234 PRJNA242641_S_NODE_1332_length_200_cov_20.239766_g1304_i0 PRJNA242641 1332 200 20.239766 40.479532 Poaceae 4479 Plants Plants 368 1.52e-97   NTclustered gi|1877194149|gb|MT784108.1| 4509 g1304 i0 100 99.5 199 0 99 0 2 200 5172 4974 Dactylis glomerata isolate DM138 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, region blastn 19900 368 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Dactylis Dactylis glomerata
15084239 15084239 PRJNA242641_S_NODE_972_length_233_cov_8.367647_g944_i0 PRJNA242641 972 233 8.367647 19.49661751 Eukaryota 2759 Plants Plants 425 1.07e-114   NTclustered gi|1042812848|gb|KT153030.1| 4499 g944 i0 99.571 1128.21888412017 233 1 100 0 1 233 295 63 Avena fatua 18S ribosomal RNA gene, partial sequence blastn 262875 425 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Avena Avena fatua
15670223 15670223 PRJNA242641_S_NODE_2313_length_154_cov_1.928000_g2285_i0 PRJNA242641 2313 154 1.928 2.96912 Persea americana 3435 Plants Plants 285 1.14e-72   NTclustered gi|166950|gb|L06094.1|AVOPOLYGAL 3435 g2285 i0 100 2 154 0 100 0 1 154 523 370 Avacado polygalacturonase mRNA, complete cds blastn 308 285 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
15670224 15670224 PRJNA242641_S_NODE_293_length_421_cov_25.079082_g265_i0 PRJNA242641 293 421 25.079082 105.58293522 Poaceae environmental sample 493875 Plants Plants 715 0   NTclustered gi|165875177|gb|EU368367.1| 493875 g265 i0 97.387 99.9643705463183 421 10 100 1 1 421 489 70 Uncultured Poaceae clone 139 18S ribosomal RNA gene, partial sequence blastn 42085 715 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae   Poaceae environmental sample
16359097 16359097 PRJNA242641_S_NODE_933_length_239_cov_4.085714_g905_i0 PRJNA242641 933 239 4.085714 9.76485646 Poaceae 4479 Plants Plants 442 1.0899999999999994e-119   NTclustered gi|427437197|ref|NC_019651.1| 4521 g905 i0 100 194.983263598326 239 0 100 0 1 239 96927 96689 Lolium multiflorum plastid, complete genome blastn 46601 442 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium multiflorum
17634271 17634271 PRJNA242641_S_NODE_1374_length_198_cov_3.426036_g1346_i0 PRJNA242641 1374 198 3.426036 6.78355128 Acer 4022 Plants Plants 366 5.4e-97   NTclustered gi|1973623053|gb|MW070171.1| 45314 g1346 i0 100 100 198 0 100 0 1 198 4323 4520 Acer rubrum external transcribed spacer small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 19800 366 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Sapindaceae Acer Acer rubrum
18219125 18219125 PRJNA242641_S_NODE_955_length_236_cov_2.318841_g927_i0 PRJNA242641 955 236 2.318841 5.47246476 Mercurialis annua 3986 Plants Plants 171 5.6e-38   NTclustered gi|2507222383|ref|XM_050348500.2| 3986 g927 i0 79.832 3.02118644067797 238 44 100 4 1 236 135 370 PREDICTED: Mercurialis annua glutelin type-A 1-like (LOC126654582), mRNA blastn 713 171 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Euphorbiaceae Mercurialis Mercurialis annua
19493386 19493386 PRJNA242641_S_NODE_916_length_241_cov_3.731132_g888_i0 PRJNA242641 916 241 3.731132 8.99202812 Persea americana 3435 Plants Plants 446 8.519999999999999e-121   NTclustered gi|166950|gb|L06094.1|AVOPOLYGAL 3435 g888 i0 100 22.4730290456432 241 0 100 0 1 241 1114 874 Avacado polygalacturonase mRNA, complete cds blastn 5416 446 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
20768955 20768955 PRJNA242641_S_NODE_1617_length_182_cov_2.320261_g1589_i0 PRJNA242641 1617 182 2.320261 4.22287502 Persea americana 3435 Plants Plants 337 3.82e-88   NTclustered gi|166948|gb|M32885.1|AVOCYP 3435 g1589 i0 100 1 182 0 100 0 1 182 1212 1393 Avocado cytochrome P-450LXXIA1 (cyp71A1) mRNA, complete cds blastn 182 337 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
22044016 22044016 PRJNA242641_S_NODE_2458_length_150_cov_3.223140_g2430_i0 PRJNA242641 2458 150 3.22314 4.83471 Olea europaea 4146 Plants Plants 219 1.1399999999999997e-52   NTclustered gi|1279083783|ref|XM_022990338.1| 158386 g2430 i0 93.793 4.78 145 9 97 0 6 150 8 152 PREDICTED: Olea europaea var. sylvestris basic form of pathogenesis-related protein 1-like (LOC111368857), mRNA blastn 717 219 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Oleaceae Olea Olea europaea
24593648 24593648 PRJNA242641_S_NODE_2140_length_160_cov_2.221374_g2112_i0 PRJNA242641 2140 160 2.221374 3.5541984 Persea americana 3435 Plants Plants 296 5.55e-76   NTclustered gi|3201546|emb|Z78202.1| 3435 g2112 i0 100 9.6 160 0 100 0 1 160 781 622 Persea americana mRNA for endochitinase blastn 1536 296 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
25282760 25282760 PRJNA242641_S_NODE_1900_length_168_cov_16.057554_g1872_i0 PRJNA242641 1900 168 16.057554 26.97669072 Poaceae 4479 Plants Plants 300 4.56e-77   NTclustered gi|427437197|ref|NC_019651.1| 4521 g1872 i0 98.81 191.982142857143 168 2 100 0 1 168 92642 92809 Lolium multiflorum plastid, complete genome blastn 32253 300 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium multiflorum
25282764 25282764 PRJNA242641_S_NODE_2300_length_154_cov_5.160000_g2272_i0 PRJNA242641 2300 154 5.16 7.9464 Poaceae 4479 Plants Plants 285 1.14e-72   NTclustered gi|1818404258|gb|MT145299.1| 4608 g2272 i0 100 100.012987012987 154 0 100 0 1 154 3552 3705 Festuca pratensis isolate Fprat16 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15402 285 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Festuca Festuca pratensis
25282768 25282768 PRJNA242641_S_NODE_320_length_406_cov_9.625995_g292_i0 PRJNA242641 320 406 9.625995 39.0815397 Poaceae 4479 Plants Plants 750 0   NTclustered gi|2922467234|ref|XR_011756586.1| 4522 g292 i0 100 1370.92857142857 406 0 100 0 1 406 1454 1859 PREDICTED: Lolium perenne 28S ribosomal RNA (LOC139838742), rRNA blastn 556597 750 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium perenne

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;