RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA235310" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA235310 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14396383 14396383 PRJNA235310_P_NODE_1952_length_283_cov_1.273504_g1926_i0 PRJNA235310 1952 283 1.273504 3.60401632 Sycon ciliatum 27933 Porifera other_Eukaryota 272 1.8399999999999999e-68   NTclustered gi|2732923973|ref|XM_065328925.1| 27933 g1926 i0 89.401 78.6466431095406 217 21 76 2 68 283 465 250 PREDICTED: Sycon ciliatum histone H3 (LOC135815608), mRNA blastn 22257 272 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;