RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA235310" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA235310 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1642173 1642173 PRJNA235310_P_NODE_4502_length_175_cov_3.404762_g4476_i0 PRJNA235310 4502 175 3.404762 5.9583335 Phytophthora hydrogena 1286608 SAR_Eukaryotes SAR_Eukaryotes 182 1.8e-41   NTclustered gi|1233050041|gb|KX252277.1| 1286608 g4476 i0 85.465 97.8228571428571 172 25 98 0 1 172 185 14 Phytophthora hydrogena isolate 44G8(authentic) heat shock protein 90 gene, partial cds blastn 17119 182 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora hydrogena
8020790 8020790 PRJNA235310_P_NODE_5567_length_166_cov_0.888889_g5541_i0 PRJNA235310 5567 166 0.888889 1.47555574 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 78.7 2.29e-10   NTclustered gi|695372681|ref|XM_009516579.1| 67593 g5541 i0 95.833 13.9096385542169 48 2 29 0 30 77 703 656 Phytophthora sojae hypothetical protein mRNA blastn 2309 78.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
18219023 18219023 PRJNA235310_P_NODE_2935_length_222_cov_1.803468_g2909_i0 PRJNA235310 2935 222 1.803468 4.00369896 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 137 5.279999999999999e-28   NTclustered gi|301121759|ref|XM_002908561.1| 403677 g2909 i0 78.922 4.83333333333333 204 41 91 2 18 220 629 427 Phytophthora infestans T30-4 succinyl-CoA ligase subunit alpha, mitochondrial precursor (PITG_02026), partial mRNA blastn 1073 137 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
19493349 19493349 PRJNA235310_P_NODE_5476_length_166_cov_0.888889_g5450_i0 PRJNA235310 5476 166 0.888889 1.47555574 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 122 1.0399999999999997e-23   NTclustered gi|2794910559|ref|XM_067891130.1| 164328 g5450 i0 81.757 2.46385542168675 148 25 89 2 20 166 524 378 Phytophthora ramorum 3-oxoacyl-[acyl-carrier-protein] reductase FabG (KRP23_5997), partial mRNA blastn 409 122 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;