RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA235310" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA235310 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1642188 1642188 PRJNA235310_P_NODE_5682_length_165_cov_1.344828_g5656_i0 PRJNA235310 5682 165 1.344828 2.2189662 Haliotis cracherodii 6455 Mollusca Mollusca 200 4.659999999999998e-47   NTclustered gi|2911805511|ref|XM_071236152.1| 6455 g5656 i0 88.485 94.9515151515152 165 19 100 0 1 165 282 118 PREDICTED: Haliotis cracherodii tubulin beta chain (LOC139454448), mRNA blastn 15667 200 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis cracherodii
4194421 4194421 PRJNA235310_P_NODE_1564_length_322_cov_1.128205_g1538_i0 PRJNA235310 1564 322 1.128205 3.6328201 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.008   NTclustered gi|2912981848|dbj|AP039587.1| 145626 g1538 i0 100 0.0900621118012422 29 0 9 0 53 81 8815440 8815468 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 6, sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
10571476 10571476 PRJNA235310_P_NODE_949_length_408_cov_2.022284_g923_i0 PRJNA235310 949 408 2.022284 8.25091872 Littorina saxatilis 31220 Mollusca Mollusca 54.7 0.011   NTclustered gi|2868616210|ref|XM_070343508.1| 31220 g923 i0 96.97 0.0808823529411765 33 0 8 1 324 356 1590 1559 PREDICTED: Littorina saxatilis microfibrillar-associated protein 1-like (LOC138970926), mRNA blastn 33 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Littorinidae Littorina Littorina saxatilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;