RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA235310" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA235310 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5470692 5470692 PRJNA235310_P_NODE_1885_length_289_cov_0.866667_g1859_i0 PRJNA235310 1885 289 0.866667 2.50466763 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 488 1.7199999999999998e-133   NTclustered gi|1803019098|gb|MT007870.1| 56466 g1859 i0 97.232 21.2283737024221 289 6 100 2 1 289 1066 1352 Peranema trichophorum strain PtR small subunit ribosomal RNA gene, partial sequence blastn 6135 488 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
10571378 10571378 PRJNA235310_P_NODE_1289_length_355_cov_1.444444_g1263_i0 PRJNA235310 1289 355 1.444444 5.1277762 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 627 4.3899999999999987e-175   NTclustered gi|27461806|gb|AY130826.1| 56466 g1263 i0 98.592 9.18591549295775 355 4 100 1 1 355 94 447 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 3261 627 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
10571458 10571458 PRJNA235310_P_NODE_5689_length_165_cov_1.301724_g5663_i0 PRJNA235310 5689 165 1.301724 2.1478446 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 305 9.59e-79   NTclustered gi|1173576277|gb|KY883384.1| 56466 g5663 i0 100 80.6484848484849 165 0 100 0 1 165 328 492 Peranema trichophorum isolate PT small subunit ribosomal RNA gene, partial sequence blastn 13307 305 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
11845925 11845925 PRJNA235310_P_NODE_2910_length_224_cov_0.891429_g2884_i0 PRJNA235310 2910 224 0.891429 1.99680096 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 237 5.1200000000000006e-58   NTclustered gi|226347408|gb|FJ807243.1| 56466 g2884 i0 86.026 4.54910714285714 229 22 100 10 1 224 1425 1202 Peranema trichophorum strain CCAP 1260/1 B elongation factor 1 alpha mRNA, partial cds blastn 1019 237 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
13121142 13121142 PRJNA235310_P_NODE_2291_length_256_cov_1.169082_g2265_i0 PRJNA235310 2291 256 1.169082 2.99284992 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 274 4.5599999999999997e-69   NTclustered gi|2496716865|gb|OQ872454.1| 91374 g2265 i0 87.137 99.15625 241 31 94 0 13 253 1201 961 Diplonema papillatum strain ATCC 50162 HSPA-1 mRNA, complete cds blastn 25384 274 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
13121196 13121196 PRJNA235310_P_NODE_5371_length_167_cov_0.881356_g5345_i0 PRJNA235310 5371 167 0.881356 1.47186452 Parabodo caudatus 351713 Euglenozoa other_Eukaryota 134 4.86e-27   NTclustered gi|677286266|gb|KF997854.1| 351713 g5345 i0 84.173 68.0479041916168 139 20 83 2 6 143 154 291 Parabodo caudatus translation elongation factor 1-alpha (EF1A) mRNA, partial cds blastn 11364 134 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Parabodonida   Parabodo Parabodo caudatus
18218994 18218994 PRJNA235310_P_NODE_1415_length_340_cov_0.893471_g1389_i0 PRJNA235310 1415 340 0.893471 3.0378014 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 427 4.569999999999999e-115   NTclustered gi|27461806|gb|AY130826.1| 56466 g1389 i0 89.855 1.01470588235294 345 18 100 12 1 340 626 958 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 345 427 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;