RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA235310" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA235310 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
367344 367344 PRJNA235310_P_NODE_221_length_709_cov_10.163636_g200_i0 PRJNA235310 221 709 10.163636 72.06017924 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 374 1.33e-98   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g200 i0 79.235 65.4118476727786 549 104 77 8 143 686 544 1 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 46377 374 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
1642115 1642115 PRJNA235310_P_NODE_1482_length_332_cov_1.190813_g1456_i0 PRJNA235310 1482 332 1.190813 3.95349916 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 147 1.39e-30   NTclustered gi|470439750|ref|XM_004339178.1| 1257118 g1456 i0 76.552 6.85542168674699 290 54 85 10 1 283 283 1 Acanthamoeba castellanii str. Neff GDPassociated inhibitor, putative (ACA1_058790), partial mRNA blastn 2276 147 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
2917953 2917953 PRJNA235310_P_NODE_23_length_1497_cov_4.029696_g15_i0 PRJNA235310 23 1497 4.029696 60.32454912 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 1088 0   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g15 i0 81.205 87.7160988643955 1378 236 91 18 3 1370 1156 2520 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 131311 1088 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10571394 10571394 PRJNA235310_P_NODE_2089_length_271_cov_2.279279_g2063_i0 PRJNA235310 2089 271 2.279279 6.17684609 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 56.5 0.002   NTclustered gi|470378920|ref|XM_004333477.1| 1257118 g2063 i0 94.444 0.132841328413284 36 2 13 0 123 158 43 78 Acanthamoeba castellanii str. Neff Actobindin, putative (ACA1_256510), partial mRNA blastn 36 56.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11845924 11845924 PRJNA235310_P_NODE_2730_length_231_cov_1.302198_g2704_i0 PRJNA235310 2730 231 1.302198 3.00807738 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 60.2 1.23e-4   NTclustered gi|470460327|ref|XM_004341401.1| 1257118 g2704 i0 94.737 0.164502164502165 38 2 16 0 159 196 564 601 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_265890), partial mRNA blastn 38 60.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11845958 11845958 PRJNA235310_P_NODE_510_length_528_cov_1.866388_g486_i0 PRJNA235310 510 528 1.866388 9.85452864 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 278 7.850000000000001e-70   NTclustered gi|470484553|ref|XM_004344028.1| 1257118 g486 i0 79.744 51.8106060606061 390 73 73 5 137 523 96 482 Acanthamoeba castellanii str. Neff Sadenosyl-L-homocysteine hydrolase, putative (ACA1_054200), partial mRNA blastn 27356 278 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18219061 18219061 PRJNA235310_P_NODE_475_length_540_cov_6.101833_g451_i0 PRJNA235310 475 540 6.101833 32.9498982 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 231 6.349999999999998e-56   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g451 i0 80.464 55.6092592592593 302 59 56 0 99 400 422 121 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 30029 231 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;