RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA235310" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA235310 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9295418 9295418 PRJNA235310_P_NODE_248_length_684_cov_5.946457_g227_i0 PRJNA235310 248 684 5.946457 40.67376588 Polychytrium aggregatum 110093 Fungi Fungi 195 1.07e-44   NTclustered gi|2432162630|ref|XM_053112000.1| 110093 g227 i0 76.238 20.3552631578947 404 74 58 16 218 613 523 134 Polychytrium aggregatum ribosomal protein L22/L17 (BJ171DRAFT_515986), mRNA blastn 13923 195 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
14396382 14396382 PRJNA235310_P_NODE_1932_length_284_cov_9.140426_g1906_i0 PRJNA235310 1932 284 9.140426 25.95880984 Polychytrium aggregatum 110093 Fungi Fungi 121 7.09e-23   NTclustered gi|2432138713|ref|XM_053107478.1| 110093 g1906 i0 84.252 7.55985915492958 127 16 44 3 148 272 148 24 Polychytrium aggregatum large subunit ribosomal protein 29 (BJ171DRAFT_421272), partial mRNA blastn 2147 121 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;