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contig_metadata

33 rows where analysis = "blastn", bioproject = "PRJNA235310" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 33 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA235310 · 33 ✖

analysis 1

  • blastn · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
367359 367359 PRJNA235310_P_NODE_2921_length_223_cov_1.442529_g2895_i0 PRJNA235310 2921 223 1.442529 3.21683967 Emydura macquarii 90392 Chordata Chordata 248 2.35e-61   NTclustered gi|2791214020|ref|XM_067545866.1| 1129001 g2895 i0 87.558 94.7354260089686 217 23 96 4 7 221 656 442 PREDICTED: Emydura macquarii macquarii heat shock cognate 71 kDa protein-like (LOC137151594), mRNA blastn 21126 248 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Chelidae Emydura Emydura macquarii
1056683 1056683 PRJNA235310_P_NODE_2161_length_266_cov_1.433180_g2135_i0 PRJNA235310 2161 266 1.43318 3.8122588 Aves 8782 Chordata Chordata 115 3.0600000000000003e-21   NTclustered gi|2583782972|ref|XM_059826112.1| 37040 g2135 i0 76.887 35.9924812030075 212 43 79 5 58 266 175 383 PREDICTED: Gavia stellata ribosomal protein L27a (RPL27A), mRNA blastn 9574 115 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gaviiformes Gaviidae Gavia Gavia stellata
1056688 1056688 PRJNA235310_P_NODE_5661_length_165_cov_1.465517_g5635_i0 PRJNA235310 5661 165 1.465517 2.41810305 Anser 8842 Chordata Chordata 305 9.59e-79   NTclustered gi|1580139345|gb|MK133021.1| 8843 g5635 i0 100 98.6727272727273 165 0 100 0 1 165 6846 7010 Anser anser breed Landes goose mitochondrion, complete genome blastn 16281 305 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser anser
1056692 1056692 PRJNA235310_P_NODE_6181_length_163_cov_0.912281_g6155_i0 PRJNA235310 6181 163 0.912281 1.48701803 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 58.4 2.92e-4   NTclustered gi|2496830434|ref|XM_055616653.1| 48139 g6155 i0 90.909 17.6319018404908 44 2 26 2 113 154 392 349 PREDICTED: Psammomys obesus general transcription factor IIIC subunit 3 (Gtf3c3), mRNA blastn 2874 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Psammomys Psammomys obesus
1642183 1642183 PRJNA235310_P_NODE_5342_length_167_cov_0.881356_g5316_i0 PRJNA235310 5342 167 0.881356 1.47186452 Anser cygnoides 8845 Chordata Chordata 309 7.53e-80   NTclustered gi|2782239226|ref|XM_066983120.1| 8845 g5316 i0 100 47.125748502994 167 0 100 0 1 167 6218 6384 PREDICTED: Anser cygnoides protein PHTF1 (LOC106041316), transcript variant X4, mRNA blastn 7870 309 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
8020736 8020736 PRJNA235310_P_NODE_1627_length_315_cov_1.368421_g1601_i0 PRJNA235310 1627 315 1.368421 4.31052615 Jaculus jaculus 51337 Chordata Chordata 80.5 1.35e-10   NTclustered gi|2147867022|ref|XM_004655063.2| 51337 g1601 i0 90.323 13.1777777777778 62 5 19 1 132 192 1179 1240 PREDICTED: Jaculus jaculus prolyl 4-hydroxylase subunit beta (P4hb), mRNA blastn 4151 80.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Dipodidae Jaculus Jaculus jaculus
8020787 8020787 PRJNA235310_P_NODE_5107_length_168_cov_0.873950_g5081_i0 PRJNA235310 5107 168 0.87395 1.468236 Sus scrofa 9823 Chordata Chordata 134 4.9000000000000005e-27   NTclustered gi|350935515|emb|FQ073830.8| 9823 g5081 i0 81.395 62.1964285714286 172 24 98 6 1 164 92110 91939 Pig DNA sequence from clone CH242-144I12 on chromosome X, complete sequence blastn 10449 134 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
9984726 9984726 PRJNA235310_P_NODE_3248_length_211_cov_0.802469_g3222_i0 PRJNA235310 3248 211 0.802469 1.69320959 Artiodactyla 91561 Chordata Chordata 335 1.6399999999999994e-87   NTclustered gi|2871732370|ref|XR_002310585.2| 9874 g3222 i0 95.261 1062.89573459716 211 10 100 0 1 211 9549 9759 PREDICTED: Odocoileus virginianus uncharacterized lncRNA (LOC110126909), transcript variant X3, ncRNA blastn 224271 335 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Odocoileus Odocoileus virginianus
11259843 11259843 PRJNA235310_P_NODE_5109_length_168_cov_0.873950_g5083_i0 PRJNA235310 5109 168 0.87395 1.468236 Anatidae 8830 Chordata Chordata 305 9.81e-79   NTclustered gi|2782233881|ref|XM_013201435.3| 8845 g5083 i0 99.405 100.125 168 1 100 0 1 168 3450 3283 PREDICTED: Anser cygnoides N-ethylmaleimide sensitive factor, vesicle fusing ATPase (NSF), transcript variant X4, mRNA blastn 16821 305 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
11845964 11845964 PRJNA235310_P_NODE_5790_length_165_cov_0.896552_g5764_i0 PRJNA235310 5790 165 0.896552 1.4793108 Anser cygnoides 8845 Chordata Chordata 305 9.59e-79   NTclustered gi|2782189653|ref|XM_067002077.1| 8845 g5764 i0 100 6.01212121212121 165 0 100 0 1 165 3354 3518 PREDICTED: Anser cygnoides eukaryotic translation initiation factor 5A2 (EIF5A2), mRNA blastn 992 305 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
11845983 11845983 PRJNA235310_P_NODE_950_length_408_cov_1.144847_g924_i0 PRJNA235310 950 408 1.144847 4.67097576 Cairina moschata 8855 Chordata Chordata 54.7 0.011   NTclustered gi|2921976101|gb|CP130420.1| 8855 g924 i0 100 0.071078431372549 29 0 7 0 181 209 52479235 52479263 Cairina moschata breed yongchun chromosome 5 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
12535229 12535229 PRJNA235310_P_NODE_2190_length_264_cov_1.227907_g2164_i0 PRJNA235310 2190 264 1.227907 3.24167448 Passeriformes 9126 Chordata Chordata 58.4 5.18e-4   NTclustered gi|2687972474|ref|XM_063399320.1| 208062 g2164 i0 100 11.4431818181818 31 0 12 0 115 145 33 63 PREDICTED: Prinia subflava poly(A) polymerase alpha (PAPOLA), transcript variant X4, mRNA blastn 3021 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Cisticolidae Prinia Prinia subflava
12535238 12535238 PRJNA235310_P_NODE_5570_length_166_cov_0.888889_g5544_i0 PRJNA235310 5570 166 0.888889 1.47555574 Bos 9903 Chordata Chordata 279 5.86e-71   NTclustered gi|2633755520|ref|XM_061387237.1| 9906 g5544 i0 97.561 2.96385542168675 164 3 98 1 4 166 6474 6637 PREDICTED: Bos javanicus calpain small subunit 2 (CAPNS2), mRNA blastn 492 279 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
13121198 13121198 PRJNA235310_P_NODE_5531_length_166_cov_0.888889_g5505_i0 PRJNA235310 5531 166 0.888889 1.47555574 Anser cygnoides 8845 Chordata Chordata 302 1.2500000000000001e-77   NTclustered gi|2782217199|ref|XM_048057839.2| 8845 g5505 i0 99.398 93.7831325301205 166 1 100 0 1 166 1019 854 PREDICTED: Anser cygnoides caldesmon 1 (CALD1), transcript variant X2, mRNA blastn 15568 302 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
13121214 13121214 PRJNA235310_P_NODE_6471_length_157_cov_2.888889_g6445_i0 PRJNA235310 6471 157 2.888889 4.53555573 Muntiacus reevesi 9886 Chordata Chordata 73.1 9.94e-9   NTclustered gi|2746072558|ref|XM_065943203.1| 9886 g6445 i0 78.378 0.707006369426752 111 24 71 0 26 136 239 129 PREDICTED: Muntiacus reevesi large ribosomal subunit protein eL39-like (LOC136173523), mRNA blastn 111 73.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus reevesi
13810060 13810060 PRJNA235310_P_NODE_5191_length_168_cov_0.873950_g5165_i0 PRJNA235310 5191 168 0.87395 1.468236 Aves 8782 Chordata Chordata 305 9.81e-79   NTclustered gi|1944700371|ref|XM_027448256.2| 8839 g5165 i0 99.405 100 168 1 100 0 1 168 442 609 PREDICTED: Anas platyrhynchos thymosin beta 4 X-linked (TMSB4X), mRNA blastn 16800 305 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas platyrhynchos
13810061 13810061 PRJNA235310_P_NODE_5551_length_166_cov_0.888889_g5525_i0 PRJNA235310 5551 166 0.888889 1.47555574 Anatidae 8830 Chordata Chordata 283 4.53e-72   NTclustered gi|2782225763|ref|XM_066989732.1| 8845 g5525 i0 97.59 91.6144578313253 166 2 100 2 1 166 749 912 PREDICTED: Anser cygnoides proteasome maturation protein (POMP), transcript variant X1, mRNA blastn 15208 285 0.992982456140351 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
14396440 14396440 PRJNA235310_P_NODE_5672_length_165_cov_1.344828_g5646_i0 PRJNA235310 5672 165 1.344828 2.2189662 Phascolarctos cinereus 38626 Chordata Chordata 54.7 0.004   NTclustered gi|1190457130|ref|XM_020976707.1| 38626 g5646 i0 94.286 0.212121212121212 35 2 21 0 52 86 6 40 PREDICTED: Phascolarctos cinereus lysophosphatidylcholine acyltransferase 1 (LPCAT1), transcript variant X1, mRNA blastn 35 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Phascolarctidae Phascolarctos Phascolarctos cinereus
15084202 15084202 PRJNA235310_P_NODE_3592_length_199_cov_1.313333_g3566_i0 PRJNA235310 3592 199 1.313333 2.61353267 Anatidae 8830 Chordata Chordata 368 1.51e-97   NTclustered gi|2782234833|ref|XM_066981778.1| 8845 g3566 i0 100 99.78391959799 199 0 100 0 1 199 4429 4231 PREDICTED: Anser cygnoides collagen type I alpha 1 chain (COL1A1), mRNA blastn 19857 368 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
15670148 15670148 PRJNA235310_P_NODE_2493_length_244_cov_3.656410_g2467_i0 PRJNA235310 2493 244 3.65641 8.9216404 Anser cygnoides 8845 Chordata Chordata 448 2.4e-121   NTclustered gi|814557319|gb|KP881611.1| 8845 g2467 i0 100 99.733606557377 242 0 99 0 3 244 8956 8715 Anser cygnoides breed Youjiang mitochondrion, complete genome blastn 24335 448 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
15670187 15670187 PRJNA235310_P_NODE_5313_length_167_cov_0.881356_g5287_i0 PRJNA235310 5313 167 0.881356 1.47186452 Mus musculus 10090 Chordata Chordata 309 7.53e-80   NTclustered gi|354800032|gb|JN964533.1| 10090 g5287 i0 100 4 167 0 100 0 1 167 24060 23894 Mus musculus targeted KO-first, conditional ready, lacZ-tagged mutant allele Ppm1b:tm1a(KOMP)Wtsi; transgenic blastn 668 309 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
16359066 16359066 PRJNA235310_P_NODE_5673_length_165_cov_1.344828_g5647_i0 PRJNA235310 5673 165 1.344828 2.2189662 Petromyzontidae 7746 Chordata Chordata 143 7.96e-30   NTclustered gi|2635895842|ref|XM_061572394.1| 7753 g5647 i0 88.333 24.0545454545455 120 13 73 1 46 165 525 407 PREDICTED: Lethenteron reissneri ribosomal protein S15 (RPS15), mRNA blastn 3969 143 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lethenteron Lethenteron reissneri
17634239 17634239 PRJNA235310_P_NODE_3154_length_214_cov_0.921212_g3128_i0 PRJNA235310 3154 214 0.921212 1.97139368 Artiodactyla 91561 Chordata Chordata 346 7.72e-91   NTclustered gi|2492354427|ref|XM_055394069.1| 68408 g3128 i0 95.794 1017.86448598131 214 9 100 0 1 214 14683 14896 PREDICTED: Moschus berezovskii RAB21, member RAS oncogene family (RAB21), mRNA blastn 217823 346 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Moschidae Moschus Moschus berezovskii
17634241 17634241 PRJNA235310_P_NODE_3474_length_202_cov_2.039216_g3448_i0 PRJNA235310 3474 202 2.039216 4.11921632 Anatidae 8830 Chordata Chordata 361 2.5699999999999994e-95   NTclustered gi|2782246889|ref|XM_048054476.2| 8845 g3448 i0 99.01 100.108910891089 202 0 100 1 1 202 4520 4321 PREDICTED: Anser cygnoides collagen type I alpha 2 chain (COL1A2), transcript variant X1, mRNA blastn 20222 361 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
18908097 18908097 PRJNA235310_P_NODE_6115_length_163_cov_0.912281_g6089_i0 PRJNA235310 6115 163 0.912281 1.48701803 Anatidae 8830 Chordata Chordata 300 4.39e-77   NTclustered gi|1944856967|ref|XM_027459944.2| 8839 g6089 i0 100 98.3067484662577 162 0 99 0 1 162 2238 2399 PREDICTED: Anas platyrhynchos survival motor neuron domain containing 1 (SMNDC1), mRNA blastn 16024 300 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas platyrhynchos
19493350 19493350 PRJNA235310_P_NODE_5596_length_166_cov_0.888889_g5570_i0 PRJNA235310 5596 166 0.888889 1.47555574 Anser cygnoides 8845 Chordata Chordata 302 1.2500000000000001e-77   NTclustered gi|2782191659|ref|XM_048063162.2| 8845 g5570 i0 99.398 30.9397590361446 166 1 100 0 1 166 4733 4898 PREDICTED: Anser cygnoides LIM zinc finger domain containing 2 (LIMS2), transcript variant X1, mRNA blastn 5136 302 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
20182679 20182679 PRJNA235310_P_NODE_4556_length_174_cov_2.496000_g4530_i0 PRJNA235310 4556 174 2.496 4.34304 Anser 8842 Chordata Chordata 322 1.01e-83   NTclustered gi|2781112747|emb|OZ124297.1| 8843 g4530 i0 100 90.7471264367816 174 0 100 0 1 174 13417 13590 Anser anser genome assembly, organelle: mitochondrion blastn 15790 322 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser anser
21458368 21458368 PRJNA235310_P_NODE_3577_length_199_cov_1.700000_g3551_i0 PRJNA235310 3577 199 1.7 3.383 Mammalia 40674 Chordata Chordata 99 2.19e-16   NTclustered gi|1701999669|ref|XM_029916029.1| 37032 g3551 i0 82.883 43.2763819095477 111 17 55 2 1 110 997 1106 PREDICTED: Suricata suricatta SEC61 translocon alpha 1 subunit (SEC61A1), mRNA blastn 8612 99 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Herpestidae Suricata Suricata suricatta
21458376 21458376 PRJNA235310_P_NODE_6417_length_162_cov_0.920354_g6391_i0 PRJNA235310 6417 162 0.920354 1.49097348 Anatidae 8830 Chordata Chordata 283 4.39e-72   NTclustered gi|2782288380|ref|XM_066999878.1| 8845 g6391 i0 98.148 89.3888888888889 162 3 100 0 1 162 21846 21685 PREDICTED: Anser cygnoides nebulin (NEB), transcript variant X15, mRNA blastn 14481 283 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
22043954 22043954 PRJNA235310_P_NODE_3858_length_192_cov_1.454545_g3832_i0 PRJNA235310 3858 192 1.454545 2.7927264 Anser cygnoides 8845 Chordata Chordata 353 4.05e-93   NTclustered gi|2782219223|ref|XM_013196356.3| 8845 g3832 i0 100 22.078125 191 0 99 0 2 192 3448 3258 PREDICTED: Anser cygnoides WD repeat domain 3 (WDR3), mRNA blastn 4239 353 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
22733425 22733425 PRJNA235310_P_NODE_5278_length_167_cov_0.881356_g5252_i0 PRJNA235310 5278 167 0.881356 1.47186452 Bubalus 9918 Chordata Chordata 298 1.63e-76   NTclustered gi|2148394134|ref|XM_044939874.2| 89462 g5252 i0 99.39 98.2035928143713 164 1 98 0 4 167 3729 3566 PREDICTED: Bubalus bubalis protein tyrosine phosphatase receptor type D (PTPRD), transcript variant X14, mRNA blastn 16400 298 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bubalus Bubalus bubalis
24593561 24593561 PRJNA235310_P_NODE_1600_length_318_cov_1.092937_g1574_i0 PRJNA235310 1600 318 1.092937 3.47553966 Anser cygnoides 8845 Chordata Chordata 588 1.84e-163   NTclustered gi|817598365|gb|KP943133.1| 8845 g1574 i0 100 100.647798742138 318 0 100 0 1 318 10555 10238 Anser cygnoides breed Hepu mitochondrion, complete genome blastn 32006 588 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
25282728 25282728 PRJNA235310_P_NODE_3540_length_200_cov_1.894040_g3514_i0 PRJNA235310 3540 200 1.89404 3.78808 Mammalia 40674 Chordata Chordata 95.3 2.85e-15   NTclustered gi|2867967139|ref|XM_005597755.4| 9796 g3514 i0 83.333 10.89 102 17 51 0 9 110 487 386 PREDICTED: Equus caballus eukaryotic translation initiation factor 4A1 (EIF4A1), transcript variant X1, mRNA blastn 2178 95.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;