RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA235310" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA235310 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17634236 17634236 PRJNA235310_P_NODE_1854_length_291_cov_1.107438_g1828_i0 PRJNA235310 1854 291 1.107438 3.22264458 Deinococcus 1298 Bacteria Bacteria 531 2.84e-146   NTclustered gi|470478007|ref|NR_076423.1| 68909 g1828 i0 99.655 181.618556701031 290 1 99 0 2 291 639 350 Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence blastn 52851 536 0.990671641791045 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
18908099 18908099 PRJNA235310_P_NODE_735_length_458_cov_1.567237_g709_i0 PRJNA235310 735 458 1.567237 7.17794546 Deinococcus 1298 Bacteria Bacteria 841 0   NTclustered gi|470478007|ref|NR_076423.1| 68909 g709 i0 99.782 282.960698689956 458 1 100 0 1 458 1385 928 Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence blastn 129596 846 0.994089834515366 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;