RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA235310" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA235310 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11845975 11845975 PRJNA235310_P_NODE_650_length_482_cov_3.605081_g624_i0 PRJNA235310 650 482 3.605081 17.37649042 Thecamonas trahens 529818 Root_unresolved Root_unresolved 224 9.4e-54   NTclustered gi|923125359|ref|XM_013900694.1| 461836 g624 i0 82.879 40.7551867219917 257 36 52 6 31 283 529 277 Thecamonas trahens ATCC 50062 calmodulin (AMSG_07687), mRNA blastn 19644 224 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
15670204 15670204 PRJNA235310_P_NODE_833_length_435_cov_2.051813_g807_i0 PRJNA235310 833 435 2.051813 8.92538655 Amastigomonas marina 234594 Root_unresolved Root_unresolved 316 1.35e-81   NTclustered gi|31982973|gb|AY236711.1| 234594 g807 i0 80.405 65.232183908046 444 63 97 16 5 427 402 842 Amastigomonas marina heat shock protein 90 (Hsp90) gene, partial cds blastn 28376 316 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Amastigomonas Amastigomonas marina
18219077 18219077 PRJNA235310_P_NODE_55_length_1106_cov_4.080416_g43_i0 PRJNA235310 55 1106 4.080416 45.12940096 Thecamonas trahens 529818 Root_unresolved Root_unresolved 403 2.6999999999999994e-107   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g43 i0 76.428 17.6582278481013 823 148 72 33 207 1006 997 198 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 19530 403 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;