RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA229468" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA229468 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1642069 1642069 PRJNA229468_S_NODE_642_length_203_cov_0.993506_g629_i0 PRJNA229468 642 203 0.993506 2.01681718 Strongyloides papillosus 174720 Nematoda Nematoda 139 1.3199999999999999e-28   NTclustered gi|687022666|emb|LM525580.1| 174720 g629 i0 83.117 66.8374384236453 154 24 75 2 50 202 237377 237225 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000007 blastn 13568 139 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
7434488 7434488 PRJNA229468_S_NODE_846_length_181_cov_1.931818_g833_i0 PRJNA229468 846 181 1.931818 3.49659058 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 230 6.62e-56   NTclustered gi|687022656|emb|LM525570.1| 174720 g833 i0 89.888 94.6243093922652 178 18 98 0 4 181 200843 200666 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000005 blastn 17127 230 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;