RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA229468" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA229468 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4884540 4884540 PRJNA229468_S_NODE_144_length_403_cov_3.576271_g131_i0 PRJNA229468 144 403 3.576271 14.41237213 Dictyostelium 5782 Evosea other_Eukaryota 499 1.15e-136   NTclustered gi|330841829|ref|XM_003292845.1| 5786 g131 i0 89.421 97.8957816377171 397 40 98 2 8 403 550 945 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_73394), mRNA blastn 39452 499 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
14396337 14396337 PRJNA229468_S_NODE_412_length_244_cov_2.041026_g399_i0 PRJNA229468 412 244 2.041026 4.98010344 Lamproderma scintillans 1115720 Evosea other_Eukaryota 254 5.62e-63   NTclustered gi|2306687673|gb|MZ234286.1| 1115720 g399 i0 85.597 73.0409836065574 243 33 99 2 3 244 161 402 Lamproderma scintillans voucher LE297459 translation elongation factor EF-1 alpha (EF1A) gene, partial cds blastn 17822 254 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Lamproderma Lamproderma scintillans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;