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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA222400" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA222400 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3607014 3607014 PRJNA222400_P_NODE_1083_length_496_cov_3.872483_g1050_i0 PRJNA222400 1083 496 3.872483 19.20751568 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 318 4.329999999999999e-82   NTclustered gi|2795050181|ref|XM_067944756.1| 4785 g1050 i0 88.06 52.9233870967742 268 32 54 0 160 427 268 1 Phytophthora cinnamomi dynein light chain LC6, flagellar outer arm (IUM83_19694), partial mRNA blastn 26250 320 0.99375 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
4194294 4194294 PRJNA222400_P_NODE_4384_length_212_cov_1.276074_g4351_i0 PRJNA222400 4384 212 1.276074 2.70527688 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 135 1.8e-27   NTclustered gi|301098809|ref|XM_002898451.1| 403677 g4351 i0 81.065 0.797169811320755 169 32 80 0 44 212 447 279 Phytophthora infestans T30-4 ubiquitin-conjugating enzyme E2, putative (PITG_14594), partial mRNA blastn 169 135 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
5470577 5470577 PRJNA222400_P_NODE_725_length_613_cov_4.416667_g694_i0 PRJNA222400 725 613 4.416667 27.07416871 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 342 3.22e-89   NTclustered gi|695389557|ref|XM_009521174.1| 67593 g694 i0 86.495 243.003262642741 311 42 51 0 303 613 924 614 Phytophthora sojae hypothetical protein partial mRNA blastn 148961 342 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
5470598 5470598 PRJNA222400_P_NODE_8865_length_164_cov_0.895652_g8832_i0 PRJNA222400 8865 164 0.895652 1.46886928 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 62.1 2.27e-5   NTclustered gi|675172810|ref|XM_008897042.1| 761204 g8832 i0 92.857 0.25609756097561 42 3 26 0 1 42 1258 1299 Phytophthora parasitica INRA-310 hypothetical protein partial mRNA blastn 42 62.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
6159276 6159276 PRJNA222400_P_NODE_645_length_645_cov_6.976510_g615_i0 PRJNA222400 645 645 6.97651 44.9984895 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 372 4.33e-98   NTclustered gi|813168393|ref|XM_012348507.1| 695850 g615 i0 86 55.8604651162791 350 45 54 4 1 348 996 1343 Saprolegnia parasitica CBS 223.65 tubulin beta chain mRNA blastn 36030 372 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
8020639 8020639 PRJNA222400_P_NODE_7447_length_168_cov_0.873950_g7414_i0 PRJNA222400 7447 168 0.87395 1.468236 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 152 1.35e-32   NTclustered gi|813163350|ref|XM_012347346.1| 695850 g7414 i0 85.714 11.6845238095238 147 18 86 3 3 147 657 512 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 1963 152 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
9295290 9295290 PRJNA222400_P_NODE_548_length_691_cov_7.281931_g518_i0 PRJNA222400 548 691 7.281931 50.31814321 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 370 1.68e-97   NTclustered gi|813168393|ref|XM_012348507.1| 695850 g518 i0 85.96 50.7149059334298 349 45 50 4 345 691 1342 996 Saprolegnia parasitica CBS 223.65 tubulin beta chain mRNA blastn 35044 370 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
11259730 11259730 PRJNA222400_P_NODE_2709_length_291_cov_2.359504_g2676_i0 PRJNA222400 2709 291 2.359504 6.86615664 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 91.6 5.71e-14   NTclustered gi|1780534029|gb|MK753000.1| 4799 g2676 i0 89.041 22.4364261168385 73 8 25 0 219 291 1321 1249 Pythium torulosum isolate MISO_8-29.1 beta-tubulin mRNA, complete cds blastn 6529 91.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium torulosum
11845792 11845792 PRJNA222400_P_NODE_4890_length_201_cov_1.710526_g4857_i0 PRJNA222400 4890 201 1.710526 3.43815726 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 128 2.82e-25   NTclustered gi|301121759|ref|XM_002908561.1| 403677 g4857 i0 83.099 4.85074626865672 142 22 70 2 60 200 564 424 Phytophthora infestans T30-4 succinyl-CoA ligase subunit alpha, mitochondrial precursor (PITG_02026), partial mRNA blastn 975 128 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
13809954 13809954 PRJNA222400_P_NODE_8031_length_166_cov_0.982906_g7998_i0 PRJNA222400 8031 166 0.982906 1.63162396 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 195 2.18e-45   NTclustered gi|813233307|ref|XM_012358054.1| 695850 g7998 i0 88.75 91.5301204819277 160 16 96 2 8 166 243 85 Saprolegnia parasitica CBS 223.65 40S ribosomal protein S15a partial mRNA blastn 15194 195 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
15670017 15670017 PRJNA222400_P_NODE_5193_length_196_cov_1.367347_g5160_i0 PRJNA222400 5193 196 1.367347 2.68000012 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 102 1.66e-17   NTclustered gi|669138291|ref|XM_008606492.1| 1156394 g5160 i0 83.929 1.0765306122449 112 13 56 5 76 185 1114 1222 Saprolegnia diclina VS20 H/ACA ribonucleoprotein complex subunit 4 mRNA blastn 211 102 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;