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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA222400" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA222400 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
367175 367175 PRJNA222400_P_NODE_2301_length_325_cov_9.057971_g2268_i0 PRJNA222400 2301 325 9.057971 29.43840575 Caenorhabditis remanei 31234 Nematoda Nematoda 78.7 5.04e-10   NTclustered gi|2445352248|ref|XM_053723719.1| 31234 g2268 i0 94.118 0.550769230769231 51 3 16 0 242 292 282 232 Caenorhabditis remanei uncharacterized protein (GCK72_002963), partial mRNA blastn 179 78.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
1056590 1056590 PRJNA222400_P_NODE_881_length_548_cov_53.997996_g850_i0 PRJNA222400 881 548 53.997996 295.90901808 Metazoa 33208 Nematoda Nematoda 324 1.03e-83   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g850 i0 82.692 65.6605839416058 364 63 66 0 114 477 418 55 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 35982 327 0.990825688073395 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
11845772 11845772 PRJNA222400_P_NODE_3310_length_253_cov_1.784314_g3277_i0 PRJNA222400 3310 253 1.784314 4.51431442 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 139 1.71e-28   NTclustered gi|268619113|gb|GU130140.1| 6326 g3277 i0 77.593 4.3201581027668 241 46 94 5 17 253 5 241 Bursaphelenchus xylophilus 60S ribosomal protein L8 mRNA, complete cds blastn 1093 139 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
14396204 14396204 PRJNA222400_P_NODE_1092_length_493_cov_24.605856_g1059_i0 PRJNA222400 1092 493 24.605856 121.30687008 Pristionchus pauli 376545 Nematoda Nematoda 292 2.6e-74   NTclustered gi|150982019|gb|EF634598.1| 376545 g1059 i0 81.492 4.57606490872211 362 61 73 6 69 427 37 395 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2256 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
16944538 16944538 PRJNA222400_P_NODE_9374_length_162_cov_0.920354_g9341_i0 PRJNA222400 9374 162 0.920354 1.49097348 Strongyloides papillosus 174720 Nematoda Nematoda 113 6.1e-21   NTclustered gi|687022725|emb|LM525639.1| 174720 g9341 i0 83.333 1.57407407407407 126 18 77 3 11 135 68234 68111 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000047 blastn 255 113 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
18218913 18218913 PRJNA222400_P_NODE_8495_length_165_cov_0.896552_g8462_i0 PRJNA222400 8495 165 0.896552 1.4793108 Strongyloides ratti 34506 Nematoda Nematoda 172 1.02e-38   NTclustered gi|1376154049|ref|XM_024646386.1| 34506 g8462 i0 85.802 14.2787878787879 162 23 98 0 1 162 1023 1184 Strongyloides ratti V-type proton ATPase subunit B, kidney (SRAE_X000121000), partial mRNA blastn 2356 172 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
20768686 20768686 PRJNA222400_P_NODE_1597_length_403_cov_20.542373_g1564_i0 PRJNA222400 1597 403 20.542373 82.78576319 Pristionchus hoplostomus 1355913 Nematoda Nematoda 167 1.32e-36   NTclustered gi|524845312|gb|KC819366.1| 1355913 g1564 i0 81.166 33.0967741935484 223 28 54 11 122 337 264 49 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 13338 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
24593450 24593450 PRJNA222400_P_NODE_5740_length_187_cov_1.507246_g5707_i0 PRJNA222400 5740 187 1.507246 2.81855002 Brugia malayi 6279 Nematoda Nematoda 215 1.93e-51   NTclustered gi|2082298039|ref|XM_043075942.1| 6279 g5707 i0 90.683 26.6524064171123 161 15 86 0 5 165 161 1 Brugia malayi Uncharacterized protein (Bma-tbb-4), partial mRNA blastn 4984 215 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;