RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA222400" and tax_phylum = "Annelida"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Annelida · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA222400 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4194263 4194263 PRJNA222400_P_NODE_204_length_1038_cov_1.689585_g188_i0 PRJNA222400 204 1038 1.689585 17.5378923 Platynereis dumerilii 6359 Annelida Annelida 134 3.66e-26   NTclustered gi|83307670|emb|CT033644.1| 6359 g188 i0 78.199 1.8121387283237 211 44 20 2 252 461 657 866 Platynereis dumerilii EST IB0AAA16DC02EM1 blastn 1881 134 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Phyllodocida Nereididae Platynereis Platynereis dumerilii
11845744 11845744 PRJNA222400_P_NODE_1450_length_427_cov_1.687831_g1417_i0 PRJNA222400 1450 427 1.687831 7.20703837 Platynereis dumerilii 6359 Annelida Annelida 67.6 1.47e-6   NTclustered gi|613484554|gb|KJ405466.1| 6359 g1417 i0 83.784 0.173302107728337 74 9 17 3 98 169 2945 2873 Platynereis dumerilii isolate PlduMyo2 myosin mRNA, complete cds blastn 74 67.6 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Phyllodocida Nereididae Platynereis Platynereis dumerilii
16944474 16944474 PRJNA222400_P_NODE_3094_length_266_cov_1.359447_g3061_i0 PRJNA222400 3094 266 1.359447 3.61612902 Ailoscolex lacteospumosus 1046305 Annelida Annelida 54.7 0.007   NTclustered gi|2920003644|emb|OZ238875.1| 1046305 g3061 i0 94.444 0.240601503759398 36 1 13 1 3 37 520190 520155 Ailoscolex lacteospumosus genome assembly, chromosome: 16 blastn 64 54.7 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Crassiclitellata Ailoscolecidae Ailoscolex Ailoscolex lacteospumosus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;