RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA222400" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA222400 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7434437 7434437 PRJNA222400_P_NODE_8286_length_165_cov_1.344828_g8253_i0 PRJNA222400 8286 165 1.344828 2.2189662 Luteitalea 2004797 Bacteria Bacteria 300 4.46e-77   NTclustered gi|1016914409|gb|CP015136.1| 1855912 g8253 i0 99.394 153.884848484848 165 1 100 0 1 165 654403 654239 Luteitalea pratensis strain DSM 100886 chromosome, complete genome blastn 25391 300 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea pratensis
19493180 19493180 PRJNA222400_P_NODE_4976_length_200_cov_1.033113_g4943_i0 PRJNA222400 4976 200 1.033113 2.066226 Vicinamibacteria bacterium 2793154 Bacteria Bacteria 111 2.83e-20   NTclustered gi|2626216371|emb|OY821641.1| 2793154 g4943 i0 83.333 3.29 120 20 60 0 17 136 189416 189535 MAG: Vicinamibacteria bacterium isolate 8cd05730-cbc4-4aa5-8344-af9f7d824ee9 genome assembly, chromosome: 1 blastn 658 111 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria       Vicinamibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;