RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA222400" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA222400 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11845817 11845817 PRJNA222400_P_NODE_7250_length_169_cov_0.866667_g7217_i0 PRJNA222400 7250 169 0.866667 1.46466723 Chlamydomonas reinhardtii 3055 Plants Plants 108 2.97e-19   NTclustered gi|2082256400|ref|XM_001702473.2| 3055 g7217 i0 79.487 0.923076923076923 156 28 91 3 11 164 589 742 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_10g429100v5), mRNA blastn 156 108 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
15669971 15669971 PRJNA222400_P_NODE_1553_length_410_cov_1.263158_g1520_i0 PRJNA222400 1553 410 1.263158 5.1789478 Chlorella variabilis 554065 Plants Plants 267 1.29e-66   NTclustered gi|552839119|ref|XM_005849662.1| 554065 g1520 i0 81.481 46.4292682926829 324 60 79 0 87 410 116 439 Chlorella variabilis hypothetical protein (CHLNCDRAFT_21383) mRNA, complete cds blastn 19036 267 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
23319289 23319289 PRJNA222400_P_NODE_6399_length_177_cov_1.625000_g6366_i0 PRJNA222400 6399 177 1.625 2.87625 Volvox reticuliferus 1737510 Plants Plants 75 3.19e-9   NTclustered gi|1996223801|dbj|LC586643.1| 1737510 g6366 i0 83.133 0.937853107344633 83 12 46 2 91 172 192709 192790 Volvox reticuliferus NIES-3785 genes for sex determining region, sequence_id: VretiFemaleSDR, female, complete sequence blastn 166 75 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox reticuliferus
24008474 24008474 PRJNA222400_P_NODE_5379_length_193_cov_1.222222_g5346_i0 PRJNA222400 5379 193 1.222222 2.35888846 Chlorophyta 3041 Plants Plants 172 1.22e-38   NTclustered gi|1867187243|gb|MT735192.1| 52035 g5346 i0 84.971 89.7409326424871 173 22 89 4 3 173 30 200 Lobochlamys segnis strain NH-29 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17320 172 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Lobochlamys Lobochlamys segnis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;