RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA222400" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA222400 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6744808 6744808 PRJNA222400_P_NODE_1926_length_364_cov_2.400000_g1893_i0 PRJNA222400 1926 364 2.4 8.736 Candidatus Uabimicrobium helgolandensis 3095367 Bacteria Bacteria 52.8 0.035   NTclustered gi|2793194503|gb|CP165719.1| 3095367 g1893 i0 100 0.0769230769230769 28 0 8 0 41 68 1374378 1374351 Candidatus Uabimicrobium helgolandensis strain HlEnr_7 chromosome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Uabimicrobiia Candidatus Uabimicrobiales Candidatus Uabimicrobiaceae Candidatus Uabimicrobium Candidatus Uabimicrobium helgolandensis
14396266 14396266 PRJNA222400_P_NODE_5152_length_197_cov_1.054054_g5119_i0 PRJNA222400 5152 197 1.054054 2.07648638 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 137 4.58e-28   NTclustered gi|1927958621|gb|CP054186.1| 2026777 g5119 i0 91.919 33.7258883248731 99 7 50 1 99 197 1867664 1867761 MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome blastn 6644 137 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
18218907 18218907 PRJNA222400_P_NODE_7855_length_167_cov_0.881356_g7822_i0 PRJNA222400 7855 167 0.881356 1.47186452 Rubripirellula lacrimiformis 1930273 Bacteria Bacteria 60.2 8.37e-5   NTclustered gi|1712455066|gb|CP036525.1| 1930273 g7822 i0 92.683 0.81437125748503 41 3 25 0 15 55 4362915 4362955 Rubripirellula lacrimiformis strain K22.7 chromosome, complete genome blastn 136 60.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Rubripirellula Rubripirellula lacrimiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;